1ve6
From Proteopedia
(New page: 200px<br /><applet load="1ve6" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ve6, resolution 2.1Å" /> '''Crystal structure of ...) |
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| - | [[Image:1ve6.gif|left|200px]]<br /><applet load="1ve6" size=" | + | [[Image:1ve6.gif|left|200px]]<br /><applet load="1ve6" size="350" color="white" frame="true" align="right" spinBox="true" |
caption="1ve6, resolution 2.1Å" /> | caption="1ve6, resolution 2.1Å" /> | ||
'''Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1'''<br /> | '''Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1'''<br /> | ||
==Overview== | ==Overview== | ||
| - | Acylpeptide hydrolases (APH; also known as acylamino acid releasing | + | Acylpeptide hydrolases (APH; also known as acylamino acid releasing enzyme) catalyze the removal of an N-acylated amino acid from blocked peptides. The crystal structure of an APH from the thermophilic archaeon Aeropyrum pernix K1 to 2.1 A resolution confirms it to be a member of the prolyl oligopeptidase family of serine proteases. The structure of apAPH is a symmetric homodimer with each subunit comprised of two domains. The N-terminal domain is a regular seven-bladed beta-propeller, while the C-terminal domain has a canonical alpha/beta hydrolase fold and includes the active site and a conserved Ser445-Asp524-His556 catalytic triad. The complex structure of apAPH with an organophosphorus substrate, p-nitrophenyl phosphate, has also been determined. The complex structure unambiguously maps out the substrate binding pocket and provides a basis for substrate recognition by apAPH. A conserved mechanism for protein degradation from archaea to mammals is suggested by the structural features of apAPH. |
==About this Structure== | ==About this Structure== | ||
| - | 1VE6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix] with BOG and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Acylaminoacyl-peptidase Acylaminoacyl-peptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.1 3.4.19.1] Full crystallographic information is available from [http:// | + | 1VE6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix] with <scene name='pdbligand=BOG:'>BOG</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Acylaminoacyl-peptidase Acylaminoacyl-peptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.1 3.4.19.1] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VE6 OCA]. |
==Reference== | ==Reference== | ||
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[[Category: beta propeller domain]] | [[Category: beta propeller domain]] | ||
| - | ''Page seeded by [http:// | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:34:18 2008'' |
Revision as of 13:34, 21 February 2008
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Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1
Overview
Acylpeptide hydrolases (APH; also known as acylamino acid releasing enzyme) catalyze the removal of an N-acylated amino acid from blocked peptides. The crystal structure of an APH from the thermophilic archaeon Aeropyrum pernix K1 to 2.1 A resolution confirms it to be a member of the prolyl oligopeptidase family of serine proteases. The structure of apAPH is a symmetric homodimer with each subunit comprised of two domains. The N-terminal domain is a regular seven-bladed beta-propeller, while the C-terminal domain has a canonical alpha/beta hydrolase fold and includes the active site and a conserved Ser445-Asp524-His556 catalytic triad. The complex structure of apAPH with an organophosphorus substrate, p-nitrophenyl phosphate, has also been determined. The complex structure unambiguously maps out the substrate binding pocket and provides a basis for substrate recognition by apAPH. A conserved mechanism for protein degradation from archaea to mammals is suggested by the structural features of apAPH.
About this Structure
1VE6 is a Single protein structure of sequence from Aeropyrum pernix with and as ligands. Active as Acylaminoacyl-peptidase, with EC number 3.4.19.1 Full crystallographic information is available from OCA.
Reference
Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1., Bartlam M, Wang G, Yang H, Gao R, Zhao X, Xie G, Cao S, Feng Y, Rao Z, Structure. 2004 Aug;12(8):1481-8. PMID:15296741
Page seeded by OCA on Thu Feb 21 15:34:18 2008
Categories: Acylaminoacyl-peptidase | Aeropyrum pernix | Single protein | Bartlam, M. | Cao, S. | Feng, Y. | Gao, R. | Rao, Z. | Wang, G. | Xie, G. | Yang, H. | Zhao, X. | BOG | GOL | Alpha/beta hydrolase domain | Beta propeller domain
