2c7s
From Proteopedia
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==Overview== | ==Overview== | ||
| - | The receptor-type protein tyrosine phosphatases (RPTPs) are integral | + | The receptor-type protein tyrosine phosphatases (RPTPs) are integral membrane proteins composed of extracellular adhesion molecule-like domains, a single transmembrane domain, and a cytoplasmic domain. The cytoplasmic domain consists of tandem PTP domains, of which the D1 domain is enzymatically active. RPTPkappa is a member of the R2A/IIb subfamily of RPTPs along with RPTPmu, RPTPrho, and RPTPlambda. Here, we have determined the crystal structure of catalytically active, monomeric D1 domain of RPTPkappa at 1.9 A. Structural comparison with other PTP family members indicates an overall classical PTP architecture of twisted mixed beta-sheets flanked by alpha-helices, in which the catalytically important WPD loop is in an unhindered open conformation. Though the residues forming the dimeric interface in the RPTPmu structure are all conserved, they are not involved in the protein-protein interaction in RPTPkappa. The N-terminal beta-strand, formed by betax association with betay, is conserved only in RPTPs but not in cytosolic PTPs, and this feature is conserved in the RPTPkappa structure forming a beta-strand. Analytical ultracentrifugation studies show that the presence of reducing agents and higher ionic strength are necessary to maintain RPTPkappa as a monomer. In this family the crystal structure of catalytically active RPTPmu D1 was solved as a dimer, but the dimerization was proposed to be a consequence of crystallization since the protein was monomeric in solution. In agreement, we show that RPTPkappa is monomeric in solution and crystal structure. |
==About this Structure== | ==About this Structure== | ||
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[[Category: Burgess, N.]] | [[Category: Burgess, N.]] | ||
[[Category: Das, S.]] | [[Category: Das, S.]] | ||
| - | [[Category: Debreczeni, J | + | [[Category: Debreczeni, J E.]] |
| - | [[Category: Delft, F | + | [[Category: Delft, F Von.]] |
[[Category: Edwards, A.]] | [[Category: Edwards, A.]] | ||
[[Category: Eswaran, J.]] | [[Category: Eswaran, J.]] | ||
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[[Category: transmembrane]] | [[Category: transmembrane]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:45:52 2008'' |
Revision as of 14:45, 21 February 2008
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CRYSTAL STRUCTURE OF HUMAN PROTEIN TYROSINE PHOSPHATASE KAPPA AT 1.95A RESOLUTION
Overview
The receptor-type protein tyrosine phosphatases (RPTPs) are integral membrane proteins composed of extracellular adhesion molecule-like domains, a single transmembrane domain, and a cytoplasmic domain. The cytoplasmic domain consists of tandem PTP domains, of which the D1 domain is enzymatically active. RPTPkappa is a member of the R2A/IIb subfamily of RPTPs along with RPTPmu, RPTPrho, and RPTPlambda. Here, we have determined the crystal structure of catalytically active, monomeric D1 domain of RPTPkappa at 1.9 A. Structural comparison with other PTP family members indicates an overall classical PTP architecture of twisted mixed beta-sheets flanked by alpha-helices, in which the catalytically important WPD loop is in an unhindered open conformation. Though the residues forming the dimeric interface in the RPTPmu structure are all conserved, they are not involved in the protein-protein interaction in RPTPkappa. The N-terminal beta-strand, formed by betax association with betay, is conserved only in RPTPs but not in cytosolic PTPs, and this feature is conserved in the RPTPkappa structure forming a beta-strand. Analytical ultracentrifugation studies show that the presence of reducing agents and higher ionic strength are necessary to maintain RPTPkappa as a monomer. In this family the crystal structure of catalytically active RPTPmu D1 was solved as a dimer, but the dimerization was proposed to be a consequence of crystallization since the protein was monomeric in solution. In agreement, we show that RPTPkappa is monomeric in solution and crystal structure.
About this Structure
2C7S is a Single protein structure of sequence from Homo sapiens with as ligand. Active as Protein-tyrosine-phosphatase, with EC number 3.1.3.48 Known structural/functional Site: . Full crystallographic information is available from OCA.
Reference
The crystal structure of human receptor protein tyrosine phosphatase kappa phosphatase domain 1., Eswaran J, Debreczeni JE, Longman E, Barr AJ, Knapp S, Protein Sci. 2006 Jun;15(6):1500-5. Epub 2006 May 2. PMID:16672235
Page seeded by OCA on Thu Feb 21 16:45:52 2008
Categories: Homo sapiens | Protein-tyrosine-phosphatase | Single protein | Arrowsmith, C. | Barr, A. | Burgess, N. | Das, S. | Debreczeni, J E. | Delft, F Von. | Edwards, A. | Eswaran, J. | Gileadi, O. | Knapp, S. | Longman, E. | Sundstron, M. | Ugochukwu, E. | Weigelt, J. | ACT | Glycoprotein | Hydrolase | Immunoglobulin domain | Protein phosphatase | Ptprk | Receptor | Receptor type tyrosine phosphatase kappa | Transmembrane
