User:Fadel A. Samatey/FlhBc I

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Revision as of 09:22, 30 April 2013

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Inhibition of a type III secretion system by the deletion of a short loop in one of its membrane proteins.

Vladimir A. Meshcheryakov, Akio Kitao, Hideyuki Matsunami and Fadel A. Samatey (サマテ). Acta Cryst. D69: 812-820 (2013). doi:10.1107/S0907444913002102

Brief Introduction

FlhB is a membrane protein that is part of the flagellum-specific secretion apparatus. It is required for secretion of flagellar proteins, and for bacterial motility. FlhB is paralogous to a protein in the virulence type III secretion system. FlhB has a hydrophobic integral membrane domain, predicted to have four transmembrane helices, a flexible linker that is highly conserved and essential for function, and a cytoplasmic domain. The present study reports the structures of the cytoplasmic domains of two bacterial taxa. (Please see the publication for a more detailed introduction.)

Molecular Tour: FlhBc Structures

This page is under construction. We expect to complete additional interactive molecular scenes before May 5, 2013.

1 Salmonella
2 Aquifex
3 Comparison
4 Loop 281-285
5 Flexibility of N-Terminus

Salmonella

FlhB from Salmonella typhimurium consists of 383 amino acids. The cytoplasmic domain 219-383 (length 165, 43% of full length) was crystallized. The resulting model 3b0z includes coordinates for residues 229-353 (length 125, 76% of the crystallized length). The asymmetric unit contains a single molecule ().

Alpha Helices, Beta Strands

As explained in the publication, the position of the long alpha helix appears to be stabilized by crystal contacts (not shown).

The chain is . This is believed to be autocatalytic cleavage involved in the transition of the export apparatus from hook to filament mode. Mutations that prevent this cleavage render the bacteria non-motile.

Aquifex

FlhB from the thermophile^[1] Aquifex aeolicus is shorter, 350 residues (vs. 383 for S. typhimurium), with 32% sequence identity. Residues 213-350 (length 138) were crystallized, and the resulting model 3b1s has in the asymmetric unit. The molecule displayed in the comparison in the next section, with chains designated C and D, was chosen because it has the lowest average temperature factor (66.2, vs. 84.7 and 72.6 for A,B and E,F respectively). It has coordinates for 232-337 (length 106, 77% of the crystallized segment), cleaved at NPTH between Asn263 and Pro264.

Comparison

The FlhBc Salmonella 3D structure is very similar to that of Aquifex. 102 alpha carbons align with an RMSD of 1.0 Å. Their FlhB's have 32% sequence identity. , then click the button below to do a structural alignment.

Salmonella vs. Aquifex.

Loop 281-285

Both FlhBc structures have a . Despite the fact that this loop is not conserved (see below), its deletion abolished motility. Mutation of the loop to PPPPP reduced motility, while mutation to AAAAA had no effect. The reductions in motility correlated with reductions in secretion of hook protein FlgE and filament protein FliC.

Flexibility of N-Terminus

Molecular dynamics simulations suggested that the mutations in 281-285 reduced flexibility of the N-terminal alpha helix, and hence that such flexibility may be important for function. Indeed, 226-267 (the N-terminal helix) is predicted to be intrinsically disordered. The formation of a helix seems likely to be the result of stabilization by crystal contacts mentioned above.

References and Notes

↑ Optimum growth ~90^o C.

Proteopedia Page Contributors and Editors (what is this?)

Eric Martz

Retrieved from "http://52.214.119.220/wiki/index.php/User:Fadel_A._Samatey/FlhBc_I"

@@ Line 41: / Line 41: @@
 ===Loop 281-285===
-Both FlhBc structures have a <scene name='User:Fadel_A._Samatey/FlhBc_I/281-285/2'>protruding loop, which in ''Salmonella'' is 281-285, ENKMS</scene>. Despite the fact that this loop is '''not conserved''' (see below), its deletion abolished motility. Mutation of the loop to PPPPP reduced motility, while mutation to AAAAA had no effect. The reductions in motility correlated with reductions in secretion of hook protein FlgE and filament protein FliC. Molecular dynamics simulations suggested that the mutations reduce flexibility of the N-terminal alpha helix, and hence that such flexibility may be important for function.
+Both FlhBc structures have a <scene name='User:Fadel_A._Samatey/FlhBc_I/281-285/3'>protruding loop, which in ''Salmonella'' is 281-285, ENKMS</scene>. Despite the fact that this loop is '''not conserved''' (see below), its deletion abolished motility. Mutation of the loop to PPPPP reduced motility, while mutation to AAAAA had no effect. The reductions in motility correlated with reductions in secretion of hook protein FlgE and filament protein FliC.
+===Flexibility of N-Terminus===
+Molecular dynamics simulations suggested that the mutations in 281-285 reduced flexibility of the N-terminal alpha helix, and hence that such flexibility may be important for function. Indeed, 226-267 (the N-terminal helix) is predicted to be intrinsically disordered. The formation of a helix seems likely to be the result of stabilization by crystal contacts mentioned above.
 </StructureSection>
 ===References and Notes===

User:Fadel A. Samatey/FlhBc I

From Proteopedia

Revision as of 09:22, 30 April 2013

Brief Introduction

Molecular Tour: FlhBc Structures

Contents

Salmonella

Aquifex

Comparison

Loop 281-285

Flexibility of N-Terminus

References and Notes

Proteopedia Page Contributors and Editors (what is this?)

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