User:Wayne Decatur/4ay9 pymol

From Proteopedia

Revision as of 02:17, 5 July 2013 (edit) Wayne Decatur (Talk | contribs) m (→In PyMol) ← Previous diff

Revision as of 00:14, 17 July 2013 (edit) (undo) Wayne Decatur (Talk | contribs) m (User:Wayne Decatur/Sandbox 4ay9 pymol moved to User:Wayne Decatur/4ay9 pymol: refined to point not a Sandbox any more) Next diff →

---

Revision as of 00:14, 17 July 2013

proteopedia linkproteopedia link

Making images with 4ay9

In PyMol

I found that for some reason part of the structure that in the paper is represented as a loop, PyMol was making a helix. It was small and not overly noticeable but to perfect images for Stacia's slides. I wanted to deal with it.

select NeedsToBeLoop, chain E and resi 16-17
alter NeedsToBeLoop, ss='L'             # assign residues 16-17 of chain E as loop
rebuild    

Pages with supporting information

• User:Wayne Decatur/Generate Unfolded Structures
• Pymol Posted Command Syntax and Atom Selections for PyMol
• Pymol Posted Command Syntax and Atom Selections for PyMol with 'resi' used
• Pymol Users manual page on secondary structure

Bold text