Sandbox 124

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<scene name='37/372724/Transpeptidase_domain/1'>TP</scene> domain. The NBP domain of PBP2a is anchored in the cell membrane, while the TP domain “sits” in the periplasm with its active site facing the inner surface of the cell wall. The active site contains a
<scene name='37/372724/Transpeptidase_domain/1'>TP</scene> domain. The NBP domain of PBP2a is anchored in the cell membrane, while the TP domain “sits” in the periplasm with its active site facing the inner surface of the cell wall. The active site contains a
serine residue at position 403 (<scene name='37/372724/Serine403label/2'>ser403</scene>) which catalyzes the cross-linking of the peptidoglycan rows with pentaglycine cross-links.
serine residue at position 403 (<scene name='37/372724/Serine403label/2'>ser403</scene>) which catalyzes the cross-linking of the peptidoglycan rows with pentaglycine cross-links.
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'''Catalytic Mechanism of PBP2a
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The D-Ala-D-Ala side-chain substrate of the peptidoglycan accesses the active site of the PBP2a.
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Ser403 nucleophilically attacks the peptide bond of the terminal D-Ala residues of the substrate. The terminal D-Ala residue then exits the active site.
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The now terminal D-Ala residue forms a covalent bond to Ser403, while a cross-linking pentaglycine chain enters the active site.
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A covalent bond forms between the pentaglycine chain and the terminal D-Ala residue, regenerating the active site serine residue.

Revision as of 18:32, 25 July 2013

PDB ID 4dki

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