Beta-Hexosaminidase

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_2x0y| PDB=2x0y | SIZE=400| SCENE= |right|CAPTION=β-hexoaminidase dimer complex with inhibitor [[2x0y]] }}
+
<StructureSection load='' size='450' side='right' scene='Beta-Hexosaminidase/Opening/3' caption=''>
-
<applet load="" size="500" color="" frame="true" spin="on" Scene ="Beta-Hexosaminidase/Opening/3" align="right" caption="Crystal Structure of Human β-Hexosaminidase α and β chains, ([[2gjx]])"/>
 
=== {{Nowrap|Structure of Human β-Hexosaminidase A}} and its association with Tay-Sachs disease===
=== {{Nowrap|Structure of Human β-Hexosaminidase A}} and its association with Tay-Sachs disease===
<hr/>
<hr/>
'''β-Hexosaminidase A''' is a lysosomal enzyme essential for the degradation of GM2 gangliosides. Deficiency of lysosomal β-Hexosaminidase A due to inherited defects in the α-subunit gene results in Tay-Sachs (TS) disease. The 3D structure of β-Hexosaminidase A was determined by the group of Michael N.G. James at the University of Alberta, Edmonton, Canada.<ref>PMID:16698036</ref> The structure reveals an <scene name='Beta-Hexosaminidase/Subunits/4'>αβ-heterodimer</scene>, with each subunit having a functional active site. Only the <scene name='Beta-Hexosaminidase/Alpha/2'>α-subunit</scene> active site can hydrolyze GM2 gangliosides due to <scene name='Beta-Hexosaminidase/Gsep/6'>a flexible loop</scene> α<sub>280</sub>GSEP<sub>283</sub> structure that is removed post-translationaly from β, and to the presence of <scene name='Beta-Hexosaminidase/4234/5'>α-Asn 423 and α-Arg 424</scene>. The <scene name='Beta-Hexosaminidase/Gsep_out/3'>loop structure</scene> is involved in binding the GM2 activator protein, while <scene name='Beta-Hexosaminidase/424_b/1'>α-Arg424</scene> is critical for binding the carboxylate group of the N-acetyl-neuraminic acid residue of GM2. <scene name='Beta-Hexosaminidase/2_active/1'>Two active sites</scene> are present in the HexA dimer; one comprising residues from <scene name='Beta-Hexosaminidase/Active_alpha/1'>the α-subunit</scene> (R178 D207 H262 E323 D322 W373 W392 W460 Y421 R424 N423 E462) and a second one from residues of the <scene name='Beta-Hexosaminidase/Active_beta/1'>β-subunit</scene> (R211 D240 H294 E355 D354 W405 W424 Y450 L453 D452 E491 W489). These active sites are located at the opening of TIM barrels at the interface between the α and β-subunits. The HexA <scene name='Beta-Hexosaminidase/Glyco/1'>undergoes glycosylation</scene> on the α and β-subunits; α-Asn 115, α-Asn 157 and α-Asn 295 β-Asn 84, β-Asn 142, β-Asn 190 and β-Asn 327. <scene name='Beta-Hexosaminidase/Opening/8'>Mutations</scene> in the α-subunit are associated with TS disease and with Late Onset Tay Sachs disease (LOTS) (<b><font color='#0865F1'>Chronic</font></b> & <b><font color='#F90D19'>Acute</font></b> clinical phenotype). Interestingly, <scene name='Beta-Hexosaminidase/Mut_2/2'>α-G269S</scene> is the most common mutation associated with LOTS disease.
'''β-Hexosaminidase A''' is a lysosomal enzyme essential for the degradation of GM2 gangliosides. Deficiency of lysosomal β-Hexosaminidase A due to inherited defects in the α-subunit gene results in Tay-Sachs (TS) disease. The 3D structure of β-Hexosaminidase A was determined by the group of Michael N.G. James at the University of Alberta, Edmonton, Canada.<ref>PMID:16698036</ref> The structure reveals an <scene name='Beta-Hexosaminidase/Subunits/4'>αβ-heterodimer</scene>, with each subunit having a functional active site. Only the <scene name='Beta-Hexosaminidase/Alpha/2'>α-subunit</scene> active site can hydrolyze GM2 gangliosides due to <scene name='Beta-Hexosaminidase/Gsep/6'>a flexible loop</scene> α<sub>280</sub>GSEP<sub>283</sub> structure that is removed post-translationaly from β, and to the presence of <scene name='Beta-Hexosaminidase/4234/5'>α-Asn 423 and α-Arg 424</scene>. The <scene name='Beta-Hexosaminidase/Gsep_out/3'>loop structure</scene> is involved in binding the GM2 activator protein, while <scene name='Beta-Hexosaminidase/424_b/1'>α-Arg424</scene> is critical for binding the carboxylate group of the N-acetyl-neuraminic acid residue of GM2. <scene name='Beta-Hexosaminidase/2_active/1'>Two active sites</scene> are present in the HexA dimer; one comprising residues from <scene name='Beta-Hexosaminidase/Active_alpha/1'>the α-subunit</scene> (R178 D207 H262 E323 D322 W373 W392 W460 Y421 R424 N423 E462) and a second one from residues of the <scene name='Beta-Hexosaminidase/Active_beta/1'>β-subunit</scene> (R211 D240 H294 E355 D354 W405 W424 Y450 L453 D452 E491 W489). These active sites are located at the opening of TIM barrels at the interface between the α and β-subunits. The HexA <scene name='Beta-Hexosaminidase/Glyco/1'>undergoes glycosylation</scene> on the α and β-subunits; α-Asn 115, α-Asn 157 and α-Asn 295 β-Asn 84, β-Asn 142, β-Asn 190 and β-Asn 327. <scene name='Beta-Hexosaminidase/Opening/8'>Mutations</scene> in the α-subunit are associated with TS disease and with Late Onset Tay Sachs disease (LOTS) (<b><font color='#0865F1'>Chronic</font></b> & <b><font color='#F90D19'>Acute</font></b> clinical phenotype). Interestingly, <scene name='Beta-Hexosaminidase/Mut_2/2'>α-G269S</scene> is the most common mutation associated with LOTS disease.
 +
</StructureSection>
 +
__NOTOC__
== 3D Structures of Beta-Hexosaminidase ==
== 3D Structures of Beta-Hexosaminidase ==

Revision as of 09:31, 28 August 2013

Drag the structure with the mouse to rotate


3D Structures of Beta-Hexosaminidase

Updated on 28-August-2013

2xpk, 2w1n – CpBHEXB – Clostridium perfringens
2o4e – CpBHEXB - NMR
2v5c, 2v5d – CpBHEXB catalytic domain
2jh2 – CpBHEXB cohesin-like module
3gh4 – PaBHEX – Paenibacillus
3bmx – BHEX – Bacillus subtilis
1tr9 – VcBHEX – Vibrio cholerae
1hp4 – SpBHEX – Streptomyces plicatus
2ltj – SpnBHEX G5 domain – Streptococcus pneumoniae – NMR
2yl5 – SpnBHEX residues 627-1064
2yl6, 2yll, 3rpm – SpnBHEX catalytic domain
1qba – SmBHEX – Serratia marcescens
3lmy, 1o7a, 1nou – hBHEXB β subunit – human
1o7a - hBHEXB β subunit
2gjx - hBHEXA α+β subunits
3nsm – OfBHEX residues 23-594 – Ostrinia furnacalis
4ais – BtBHEXB – Bacteroides thetaiotaomicron
4g6c – BcBHEX – Burkholderia cenocepacia
4gvf - SeBHEX – Salmonella enterica
3rcn – BHEX – Arthrobacter aurescens

Binary complexes

2gk1 - hBHEXA α+β subunits + NGT
1now - hBHEXB β subunit + GalNAc-isofagomine
1np0 - hBHEXB β subunit + intermediate analog
3gh5, 3gh7 - PaBHEX + GlcNAc
4gvf, 4gvh, 4gvi - SeBHEX + GlcNAc derivative
4hzm – SeBHEX + inhibitor
1m01 - SpBHEX + GlcNAc
1m03, 1m04 - SpBHEX (mutant) + GlcNAc
1jak - SpBHEX + inhibitor
1hp5 - SpBHEX + intermediate analog
2x0y, 2wb5, 2vur - CpBHEXB + inhibitor
2ozn – CpBHEXB + hyaluronidase
3ozo – OfBHEX residues 23-594 + NGT
3ozp – OfBHEX residues 23-594 + PUGNac
3nsn - OfBHEX residues 23-594 + chitotriomycin
2xj7 – BtBHEXB + castanospermine
2wzh, 2wzi - BtBHEXB (mutant) + oxazoline
2vvn - BtBHEX + thiazoline
2x0h - BtBHEXB Michaelis complex
2wca, 2vvs - BtBHEX + PUGNAc
2xm1, 2xm2 - BtBHEXB + lactam derivative
4aiu - BtBHEXB + pyrazole derivative
2w66, 2w67, 2w4x, 2jiw – BtBHEXB + inhibitor
3gs6, 3gsm, 2oxn - VcBHEX + PUGNAc
1y65 - VcBHEX + NAG
4gnv - BcBHEX + NAG
2yl8 – SpnBHEX catalytic domain (mutant) + NAG
4az5, 4az6, 4az7, 4az8, 4azc, 4azg, 4azh – SpnBHEX catalytic domain + inhibitor
4azi – SpnBHEX catalytic domain (mutant) + inhibitor
2yl9, 2yla – SpnBHEX residues 627-1062 (mutant) + NAG
1c7s – SmBHEX + diNAG
1c7t - SmBHEX (mutant) + diNAG
3sur - PaBHEX + NAG derivative
3sus - PaBHEX + GAL-NAG derivative
3sut - PaBHEX + PUGNac
3suu - PaBHEX + GAL-PUGNac
3suv - PaBHEX + NHAC-DNJ
3suw - PaBHEX + NHAC-CAS

References

  1. Lemieux MJ, Mark BL, Cherney MM, Withers SG, Mahuran DJ, James MN. Crystallographic structure of human beta-hexosaminidase A: interpretation of Tay-Sachs mutations and loss of GM2 ganglioside hydrolysis. J Mol Biol. 2006 Jun 16;359(4):913-29. Epub 2006 Apr 27. PMID:16698036 doi:http://dx.doi.org/10.1016/j.jmb.2006.04.004
Personal tools