Sandbox Reserved 794

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The <scene name='56/563206/Pgk_hydrophobicres/2'>hydrophobic residues</scene> are showed in grey. Hydrophobic residues are usually found inside the protein since they dislike water interactions. The <scene name='56/563206/Pgk_hydrophilicresi/1'>hydrophilic residues</scene>residues are shown in red. The hydrophilic residues are usually found on the outside of the protein since they prefer water interactions over hydrophobic residues.
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The <scene name='56/563206/Pgk_hydrophobicres/2'>hydrophobic residues</scene> are showed in grey. Hydrophobic residues are usually found inside the protein since they dislike water interactions. The <scene name='56/563206/Pgk_hydrophilicresi/1'>hydrophilic residues</scene> are shown in red. The hydrophilic residues are usually found on the outside of the protein since they prefer water interactions over hydrophobic residues.

Revision as of 23:58, 8 October 2013

This Sandbox is Reserved from Oct 10, 2013, through May 20, 2014 for use in the course "CHEM 410 Biochemistry 1 and 2" taught by Hanna Tims at the Messiah College. This reservation includes Sandbox Reserved 780 through Sandbox Reserved 807.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

phophoglycerate kinase

Drag the structure with the mouse to rotate

The of phosphoglycerate kinase shows alpha helices (purple) and beta sheets (green).

Phosphoglycerate kinase's are shown in orange. Majority of the hydrogen bonds are parallel. One can see the parallel hydrogen bonds by observing the alpha helices and beta sheets. The parallel conformation leads to a diagonal bond where as the antiparallel conformation leads to more straight up and down bonds. Disulfide bonds are not present in phosphoglycerate kinase.


The are showed in grey. Hydrophobic residues are usually found inside the protein since they dislike water interactions. The are shown in red. The hydrophilic residues are usually found on the outside of the protein since they prefer water interactions over hydrophobic residues.

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