Sandbox Reserved 798
From Proteopedia
(Difference between revisions)
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==Introduction and Basic Structure== | ==Introduction and Basic Structure== | ||
<Structure load='1U8F' size='500' frame='true' align='right' caption='Glyceraldehyde-3-phosphate dehydrogenase' scene='Insert optional scene name here' /> | <Structure load='1U8F' size='500' frame='true' align='right' caption='Glyceraldehyde-3-phosphate dehydrogenase' scene='Insert optional scene name here' /> | ||
| - | Glyceraldehyde-3-phosphate dehydrogenase, or more commonly called, <scene name='56/563210/G-3-p/ | + | Glyceraldehyde-3-phosphate dehydrogenase, or more commonly called, <scene name='56/563210/G-3-p/2'>G-3-P</scene> , is a tetrahedral protein. G-3-P is an enzyme used in glycolysis to produce NADH through a mechanism with phosphate and NAD+, which binds to the ligand binding site of G-3-P. The <scene name='56/563210/Helices_and_sheets/1'>secondary structure</scene> has both alpha helices (purple) and beta sheets (green). |
==Bonding== | ==Bonding== | ||
The <scene name='56/563210/Hydrogen_bonding_on_backbone/2'>hydrogen bonds on the backbone</scene> are colored in red. Based on the amount of the thin red lines, it is made clear that there are many hydrogen bonds. However, there are no <scene name='56/563210/Disulfide_bonds/1'> disulfide bonds </scene> within the structure, or they would have been highlighted in green. The only special binding in the G-3-P enzyme is the hydrogen bonding. Looking at the structure with the <scene name='56/563210/Beta_sheets_and_bonding/1'>beta sheets (purple) and hydrogen bonding (green)</scene> highlights the parallel structure of the beta sheets that is made obvious by the hydrogen bonding. | The <scene name='56/563210/Hydrogen_bonding_on_backbone/2'>hydrogen bonds on the backbone</scene> are colored in red. Based on the amount of the thin red lines, it is made clear that there are many hydrogen bonds. However, there are no <scene name='56/563210/Disulfide_bonds/1'> disulfide bonds </scene> within the structure, or they would have been highlighted in green. The only special binding in the G-3-P enzyme is the hydrogen bonding. Looking at the structure with the <scene name='56/563210/Beta_sheets_and_bonding/1'>beta sheets (purple) and hydrogen bonding (green)</scene> highlights the parallel structure of the beta sheets that is made obvious by the hydrogen bonding. | ||
Revision as of 15:11, 15 October 2013
| This Sandbox is Reserved from Oct 10, 2013, through May 20, 2014 for use in the course "CHEM 410 Biochemistry 1 and 2" taught by Hanna Tims at the Messiah College. This reservation includes Sandbox Reserved 780 through Sandbox Reserved 807. |
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Contents |
Glyceraldehyde-3-phosphate dehydrogenase
Introduction and Basic Structure
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Glyceraldehyde-3-phosphate dehydrogenase, or more commonly called, , is a tetrahedral protein. G-3-P is an enzyme used in glycolysis to produce NADH through a mechanism with phosphate and NAD+, which binds to the ligand binding site of G-3-P. The has both alpha helices (purple) and beta sheets (green).
Bonding
The are colored in red. Based on the amount of the thin red lines, it is made clear that there are many hydrogen bonds. However, there are no within the structure, or they would have been highlighted in green. The only special binding in the G-3-P enzyme is the hydrogen bonding. Looking at the structure with the highlights the parallel structure of the beta sheets that is made obvious by the hydrogen bonding.
Residues
The of G-3-P are colored teal. The are shown in blue.
