Sandbox Reserved 804

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This is the <scene name='56/563216/Secondary_structure/1'>Secondary Structure</scene>. The indigo represents the alpha helices and the violet represents the beta sheets.
This is the <scene name='56/563216/Secondary_structure/1'>Secondary Structure</scene>. The indigo represents the alpha helices and the violet represents the beta sheets.
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This is the secondary structure of TIM with <scene name='56/563216/Hydrogen_bonding/1'>Hydrogen Bond</scene> interactions between the backbone. H Bonds are depicted in orange. Some hydrogen bonds are shown floating above the structure because they represent the hydrogen bonds in chain B. Disulfide bonds do not exist in this structure.
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This is the secondary structure of TIM with <scene name='56/563216/Hydrogen_bonding/1'>Hydrogen Bond</scene> interactions between the backbone. H Bonds are depicted in orange. Disulfide bonds should be represented in black in this structure but they are not seen.
This image depicts the <scene name='56/563216/Hydrophobic_interactions/1'>Hydrophobic Interactions</scene> within TIM in grey. The <scene name='56/563216/Hydrophilic_interactions/1'>Hydrophilic Interactions</scene> are displayed in blue. Ignore the hydrophilic interactions shown floating above the structure because they represent the hydrophilic interactions in chain B.
This image depicts the <scene name='56/563216/Hydrophobic_interactions/1'>Hydrophobic Interactions</scene> within TIM in grey. The <scene name='56/563216/Hydrophilic_interactions/1'>Hydrophilic Interactions</scene> are displayed in blue. Ignore the hydrophilic interactions shown floating above the structure because they represent the hydrophilic interactions in chain B.
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The <scene name='56/563216/Solvent/1'>solvent</scene> is located between the alpha helices and the beta sheets. The molecules form a diagonal line and are concentrated where the monomers connect for dimer formation.

Revision as of 18:43, 16 October 2013

This Sandbox is Reserved from Oct 10, 2013, through May 20, 2014 for use in the course "CHEM 410 Biochemistry 1 and 2" taught by Hanna Tims at the Messiah College. This reservation includes Sandbox Reserved 780 through Sandbox Reserved 807.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

TRIOSEPHOSPHATE ISOMERASE

Drag the structure with the mouse to rotate

Triose phosphate isomerase (TIM) is an enzyme that catalyzes the reaction of D-glyceraldehyde 3-phosphate to glycerone phosphate. It binds with the ligand 2-Phosphoglycolic acid (PGA).This is the of TIM.

This is in TIM.

This is the . The indigo represents the alpha helices and the violet represents the beta sheets.

This is the secondary structure of TIM with interactions between the backbone. H Bonds are depicted in orange. Disulfide bonds should be represented in black in this structure but they are not seen.

This image depicts the within TIM in grey. The are displayed in blue. Ignore the hydrophilic interactions shown floating above the structure because they represent the hydrophilic interactions in chain B.

The is located between the alpha helices and the beta sheets. The molecules form a diagonal line and are concentrated where the monomers connect for dimer formation.

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