Sandbox Reserved 791

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Here are the <scene name='56/563203/Alpha_helices/1'>Alpha helices</scene>
Here are the <scene name='56/563203/Alpha_helices/1'>Alpha helices</scene>
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We can see the <scene name='56/563203/Hydrophilics/1'>hydrophilic</scene> residues here while the <scene name='56/563203/Hydrophobics/2'>hydrophobic</scene> residues are seen here.
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We can see the <scene name='56/563203/Hydrophilics/1'>hydrophilic residues in ribbon form</scene> here while the <scene name='56/563203/Hydrophobics/2'>hydrophobic residues in ribbon form</scene> are visible as well.
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We can get a clearer picture of the <scene name='56/563203/Hydrophobics_transparency_2/1'>hydrophobic</scene> chains in the presence of the rest of the molecule. The maroon chains represent the hydrophobic residues seen earlier while the transparent part of the protein shows the other residues present. We can invert this image to obtain the <scene name='56/563203/Hydrophilic_transparency_1/1'>hydrophilic chains</scene>, which are shown in light brown.
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We can get a clearer picture of the <scene name='56/563203/Hydrophobics_transparency_2/1'>hydrophobic</scene> chains as stick and wire models in the presence of the rest of the molecule. The maroon chains represent the hydrophobic residues seen earlier while the transparent part of the protein shows the other residues present. We can invert this image to obtain the <scene name='56/563203/Hydrophilic_transparency_1/1'>hydrophilic chains</scene>, which are shown in light brown.

Revision as of 18:46, 16 October 2013

This Sandbox is Reserved from Oct 10, 2013, through May 20, 2014 for use in the course "CHEM 410 Biochemistry 1 and 2" taught by Hanna Tims at the Messiah College. This reservation includes Sandbox Reserved 780 through Sandbox Reserved 807.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

PDB ID 2NU8

Drag the structure with the mouse to rotate

This is a protein with four chains

The model is seen here

This depicts the hydrogen bonding present in the backbone for the protein.

The are represented here

Here's some for the beta sheet.

Here are the

We can see the here while the are visible as well.

We can get a clearer picture of the chains as stick and wire models in the presence of the rest of the molecule. The maroon chains represent the hydrophobic residues seen earlier while the transparent part of the protein shows the other residues present. We can invert this image to obtain the , which are shown in light brown.

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