Ribosomal protein L16
From Proteopedia
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===L16 in 50S subunit+RNA=== | ===L16 in 50S subunit+RNA=== | ||
| - | [[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]] – TtRPL16 in 50S subunit+RNA fragments<br /> | + | [[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]], [[4byc]], [[4bye]] – TtRPL16 in 50S subunit+RNA fragments<br /> |
| - | [[2x9s]], [[2x9u]], [[3kni]], [[3knk]], [[3knm]], [[3kno]], [[2wrj]], [[2wrl]], [[2wro]], [[2wrr]], [[3hux]], [[3huz]], [[2wh2]], [[2wh4]], [[2wdi]], [[2wdj]], [[2wdl]], [[2wdn]], [[1vsp]], [[2v47 ]], [[2v49]], [[1vsa]], [[2hgj]], [[ 2hgq]], [[2hgu]], [[2j01]], [[2j03]], [[1yl3]], [[3mrz]], [[3ms1]], [[3i8f]], [[3i8i]], [[3i9c]], [[3i9e]], [[3f1f]], [[3f1h]], [[3d5b]], [[3d5d]], [[2b66]], [[2b9n]], [[2b9p]], [[1giy]], [[2y0v]], [[2y0x]], [[2y0z]], [[2y11]], [[2y13]], [[2y15]], [[2y17]], [[2y19]], [[3pyo]], [[3pyr]], [[3pyt]], [[3pyv]], [[2xtg]], [[2xux]], [[2xqe]] - TtRPL16 in 50S subunit+5S RRNA+23S RRNA<br /> | + | [[2x9s]], [[2x9u]], [[3kni]], [[3knk]], [[3knm]], [[3kno]], [[2wrj]], [[2wrl]], [[2wro]], [[2wrr]], [[3hux]], [[3huz]], [[2wh2]], [[2wh4]], [[2wdi]], [[2wdj]], [[2wdl]], [[2wdn]], [[1vsp]], [[2v47 ]], [[2v49]], [[1vsa]], [[2hgj]], [[ 2hgq]], [[2hgu]], [[2j01]], [[2j03]], [[1yl3]], [[3mrz]], [[3ms1]], [[3i8f]], [[3i8i]], [[3i9c]], [[3i9e]], [[3f1f]], [[3f1h]], [[3d5b]], [[3d5d]], [[2b66]], [[2b9n]], [[2b9p]], [[1giy]], [[2y0v]], [[2y0x]], [[2y0z]], [[2y11]], [[2y13]], [[2y15]], [[2y17]], [[2y19]], [[3pyo]], [[3pyr]], [[3pyt]], [[3pyv]], [[2xtg]], [[2xux]], [[2xqe]], [[4btd]], [[4kfi]], [[4kfl]], [[4kbu]], [[4kbw]], [[4kcz]], [[4kd2]], [[4kd9]], [[4kdb]], [[4kdh]], [[4kdk]], [[4k0m]], [[4k0q]], [[4jux]], [[4ejb]], [[4ejc]], [[3v6x]], [[3v6w]], [[4b8g]], [[4b8i]], [[3zn9]], [[3zne]], [[4g5l]], [[4g5n]], [[4g5u]], [[4g5w]], [[3v23]], [[3v25]], [[3v27]], [[3v29]], [[3v2d]], [[3v2f]], [[4dha]], [[4dhc]], [[4abs]], [[3uz1]], [[3uz2]], [[3uz8]], [[3uz9]], [[3uzf]], [[3uzh]], [[3uzk]], [[3uzn]], [[3uye]], [[3uyg]], [[3tve]], [[3tvh]], [[3uxq]], [[3uxr]], [[3zvp]] - TtRPL16 in 50S subunit+5S RRNA+23S RRNA<br /> |
[[3fin]] - TtRPL16 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<BR /> | [[3fin]] - TtRPL16 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<BR /> | ||
[[2wwq]] – EcRPL16 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – ''Escherichia coli''<br /> | [[2wwq]] – EcRPL16 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – ''Escherichia coli''<br /> | ||
| - | [[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3oas]], [[3oat]], [[3ofd]], [[3og0]], [[3ofq]], [[1vt2]], [[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA<br /> | + | [[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3oas]], [[3oat]], [[3ofd]], [[3og0]], [[3ofq]], [[1vt2]], [[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny]], [[4kix]], [[4kiz]], [[4kj1]], [[4kj3]], [[4kj5]], [[4kj7]], [[4kj9]], [[4kjb]], [[3uos]], [[3sgf]], [[3r8s]], [[3r8t]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA<br /> |
| - | [[3fik]], [[2gya]], [[2gyc]], [[3bbx]], [[1p85]], [[1p86]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<BR /> | + | [[3fik]], [[2gya]], [[2gyc]], [[3bbx]], [[1p85]], [[1p86]], [[3j37]], [[3j19]], [[3j0t]], [[3j0w]], [[3j0y]], [[3j11]], [[3j12]], [[3j14]], [[3izu]], [[3izt]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<BR /> |
[[3kcr]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase<br /> | [[3kcr]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase<br /> | ||
[[3bbo]] - RPL16 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach<br /> | [[3bbo]] - RPL16 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach<br /> | ||
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===L16 in 50S subunit + antibiotics=== | ===L16 in 50S subunit + antibiotics=== | ||
| - | [[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - DrRPL16 in 50S subunit+5S RRNA+23S RRNA+general stress protein Ctc+antibiotic<br /> | + | [[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]], [[4io9]], [[4ioa]], [[4ioc]] - DrRPL16 in 50S subunit+5S RRNA+23S RRNA+general stress protein Ctc+antibiotic<br /> |
| - | [[2qam]], [[2qao]], [[2qba]], [[2qbc]], [[2qoz]], [[2qp1]], [[3ofc]], [[3ofz]], [[3ofr]], [[3orb]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br /> | + | [[2qam]], [[2qao]], [[2qba]], [[2qbc]], [[2qoz]], [[2qp1]], [[3ofc]], [[3ofz]], [[3ofr]], [[3orb]], [[4gar]], [[4gau]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br /> |
| - | [[3oh5]], [[3oh7]], [[3ohj]], [[3ohk]], [[3ohz]], [[3oi1]], [[3oi3]], [[3oi5]] - TtRPL16 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br /> | + | [[3oh5]], [[3oh7]], [[3ohj]], [[3ohk]], [[3ohz]], [[3oi1]], [[3oi3]], [[3oi5]], [[4l6l]], [[4l6j]] - TtRPL16 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br /> |
===L16 in large + small ribosomal subunit=== | ===L16 in large + small ribosomal subunit=== | ||
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[[2vhm]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br /> | [[2vhm]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br /> | ||
[[2j28]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<BR /> | [[2j28]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<BR /> | ||
| + | [[3j01]] - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+ preprotein translocase<br /> | ||
===L16 in the 60S subunit=== | ===L16 in the 60S subunit=== | ||
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[[3o5h]], [[3o58]] - yRPL16 in 60S subunit+5S RRNA+25S RRNA+5.8S RRNA – yeast<br /> | [[3o5h]], [[3o58]] - yRPL16 in 60S subunit+5S RRNA+25S RRNA+5.8S RRNA – yeast<br /> | ||
[[1s1i]] - yRPL16 in 60S subunit+5S RRNA+5.8S RRNA – Cryo EM<BR /> | [[1s1i]] - yRPL16 in 60S subunit+5S RRNA+5.8S RRNA – Cryo EM<BR /> | ||
| + | [[3u5e]], [[3u5i]] - yRPL16 in 60S subunit<br /> | ||
| + | [[4b6a]] - yRPL16 in 60S subunit + P0 + P1 + P2 + ARX1 – Cryo EM<br /> | ||
[[3jyw]] – RPL16 in 60S subunit – Cryo EM – ''Thermomyces lanuginosus''<br /> | [[3jyw]] – RPL16 in 60S subunit – Cryo EM – ''Thermomyces lanuginosus''<br /> | ||
[[2ftc]] - RPL16 in 60S subunit+16S RRNA – Cryo EM – bovine | [[2ftc]] - RPL16 in 60S subunit+16S RRNA – Cryo EM – bovine | ||
Revision as of 09:45, 12 November 2013
Ribosomal protein L16 (RPL16) is one of the 34 proteins which belong to the large 50S subunit of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome. It binds to 23S RRNA and is located at the A site of the peptidyltransferase center.
3D Structures of Ribosomal protein L16
Updated on 12-November-2013
RPL16
1wki – TtRPL16 – Thermus thermophilus - NMR
L16 in 50S subunit+RNA
2xg0, 2xg2, 3kir, 3kit, 3kiw, 3kiy, 4byc, 4bye – TtRPL16 in 50S subunit+RNA fragments
2x9s, 2x9u, 3kni, 3knk, 3knm, 3kno, 2wrj, 2wrl, 2wro, 2wrr, 3hux, 3huz, 2wh2, 2wh4, 2wdi, 2wdj, 2wdl, 2wdn, 1vsp, 2v47 , 2v49, 1vsa, 2hgj, 2hgq, 2hgu, 2j01, 2j03, 1yl3, 3mrz, 3ms1, 3i8f, 3i8i, 3i9c, 3i9e, 3f1f, 3f1h, 3d5b, 3d5d, 2b66, 2b9n, 2b9p, 1giy, 2y0v, 2y0x, 2y0z, 2y11, 2y13, 2y15, 2y17, 2y19, 3pyo, 3pyr, 3pyt, 3pyv, 2xtg, 2xux, 2xqe, 4btd, 4kfi, 4kfl, 4kbu, 4kbw, 4kcz, 4kd2, 4kd9, 4kdb, 4kdh, 4kdk, 4k0m, 4k0q, 4jux, 4ejb, 4ejc, 3v6x, 3v6w, 4b8g, 4b8i, 3zn9, 3zne, 4g5l, 4g5n, 4g5u, 4g5w, 3v23, 3v25, 3v27, 3v29, 3v2d, 3v2f, 4dha, 4dhc, 4abs, 3uz1, 3uz2, 3uz8, 3uz9, 3uzf, 3uzh, 3uzk, 3uzn, 3uye, 3uyg, 3tve, 3tvh, 3uxq, 3uxr, 3zvp - TtRPL16 in 50S subunit+5S RRNA+23S RRNA
3fin - TtRPL16 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM
2wwq – EcRPL16 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – Escherichia coli
3i1n, 3i1p, 3i1r, 3i1t, 3i20, 3i22, 3e1b, 3e1d, 3df2, 3df4, 2vhn, 2qov, 2qox, 2i2t, 2i2v, 1vs6, 1vs8, 2aw4, 2awb, 3oas, 3oat, 3ofd, 3og0, 3ofq, 1vt2, 1vor, 1vou, 1vow, 1voy, 1vp0, 1pnu, 1pny, 4kix, 4kiz, 4kj1, 4kj3, 4kj5, 4kj7, 4kj9, 4kjb, 3uos, 3sgf, 3r8s, 3r8t - EcRPL16 in 50S subunit+5S RRNA+23S RRNA
3fik, 2gya, 2gyc, 3bbx, 1p85, 1p86, 3j37, 3j19, 3j0t, 3j0w, 3j0y, 3j11, 3j12, 3j14, 3izu, 3izt - EcRPL16 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM
3kcr - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase
3bbo - RPL16 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach
2zjq, 2zjr, 1nkw - DrRPL16 in 50S subunit+5S RRNA+23S RRNA – Deinococcus radiodurans
3iy9 – RPL16 in 50S subunit – Leishmania taretolae
L16 in 50S subunit + antibiotics
3dll, 2zjp, 3cf5, 1xbp, 1sm1, 1nwx, 1nwy, 3pio, 3pip, 4io9, 4ioa, 4ioc - DrRPL16 in 50S subunit+5S RRNA+23S RRNA+general stress protein Ctc+antibiotic
2qam, 2qao, 2qba, 2qbc, 2qoz, 2qp1, 3ofc, 3ofz, 3ofr, 3orb, 4gar, 4gau - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+antibiotic
3oh5, 3oh7, 3ohj, 3ohk, 3ohz, 3oi1, 3oi3, 3oi5, 4l6l, 4l6j - TtRPL16 in 50S subunit+5S RRNA+23S RRNA+antibiotic
L16 in large + small ribosomal subunit
1ml5 - EcRPL16 in 50S ribosomal subunit+30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA – EM
L16 in 50S subunit + ribosome releasing factor (RRF)
2qbe, 2qbg, 2qbi, 2qbk, 2z4l, 2z4n - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+RRF
2rdo - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM
L16 in 50S subunit + various proteins
2vhm - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix
2j28 - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM
3j01 - EcRPL16 in 50S subunit+5S RRNA+23S RRNA+ preprotein translocase
L16 in the 60S subunit
3o5h, 3o58 - yRPL16 in 60S subunit+5S RRNA+25S RRNA+5.8S RRNA – yeast
1s1i - yRPL16 in 60S subunit+5S RRNA+5.8S RRNA – Cryo EM
3u5e, 3u5i - yRPL16 in 60S subunit
4b6a - yRPL16 in 60S subunit + P0 + P1 + P2 + ARX1 – Cryo EM
3jyw – RPL16 in 60S subunit – Cryo EM – Thermomyces lanuginosus
2ftc - RPL16 in 60S subunit+16S RRNA – Cryo EM – bovine
L16 in part of 50S subunit
1njm, 1njp – DrRPL16 + 23S RRNA + tRNA acceptor stEM mimic + general stress protein CTC + antibiotic
