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Ribosomal protein L29
From Proteopedia
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===L29 in 50S subunit+RNA=== | ===L29 in 50S subunit+RNA=== | ||
| - | [[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]] – TtRPL29 in 50S subunit+RNA fragments - ''Thermus thermophilus'' <br /> | + | [[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]], [[4byc]], [[4bye]] – TtRPL29 in 50S subunit+RNA fragments - ''Thermus thermophilus'' <br /> |
| - | [[2x9s]], [[2x9u]], [[3kni]], [[3knk]], [[3knm]], [[3kno]], [[2wrj]], [[2wrl]], [[2wro]], [[2wrr]], [[3hux]], [[3huz]], [[2wh2]], [[2wh4]], [[2wdi]], [[2wdj]], [[2wdl]], [[2wdn]], [[1vsp]], [[2v47 ]], [[2v49]], [[1vsa]], [[2hgj]], [[ 2hgq]], [[2hgu]], [[2j01]], [[2j03]], [[1yl3]], [[3mrz]], [[3ms1]], [[3i8f]], [[3i8i]], [[3i9c]], [[3i9e]], [[3f1f]], [[3f1h]], [[3d5b]], [[3d5d]], [[2b66]], [[2b9n]], [[2b9p]], [[1giy]], [[2y0v]], [[2y0x]], [[2y0z]], [[2y11]], [[2y13]], [[2y15]], [[2y17]], [[2y19]], [[3pyo]], [[3pyr]], [[3pyt]], [[3pyv]], [[2xtg]], [[2xux]], [[2xqe]] - TtRPL29 in 50S subunit+5S RRNA+23S RRNA<br /> | + | [[2x9s]], [[2x9u]], [[3kni]], [[3knk]], [[3knm]], [[3kno]], [[2wrj]], [[2wrl]], [[2wro]], [[2wrr]], [[3hux]], [[3huz]], [[2wh2]], [[2wh4]], [[2wdi]], [[2wdj]], [[2wdl]], [[2wdn]], [[1vsp]], [[2v47 ]], [[2v49]], [[1vsa]], [[2hgj]], [[ 2hgq]], [[2hgu]], [[2j01]], [[2j03]], [[1yl3]], [[3mrz]], [[3ms1]], [[3i8f]], [[3i8i]], [[3i9c]], [[3i9e]], [[3f1f]], [[3f1h]], [[3d5b]], [[3d5d]], [[2b66]], [[2b9n]], [[2b9p]], [[1giy]], [[2y0v]], [[2y0x]], [[2y0z]], [[2y11]], [[2y13]], [[2y15]], [[2y17]], [[2y19]], [[3pyo]], [[3pyr]], [[3pyt]], [[3pyv]], [[2xtg]], [[2xux]], [[2xqe]], [[4btd]], [[4kfi]], [[4kfl]], [[4kbu]], [[4kbw]], [[4kcz]], [[4kd2]], [[4kd9]], [[4kdb]], [[4kdh]], [[4kdk]], [[4k0m]], [[4k0q]], [[4jux]], [[4ejb]], [[4ejc]], [[3v6x]], [[3v6w]], [[4b8g]], [[4b8i]], [[3zn9]], [[3zne]], [[4g5l]], [[4g5n]], [[4g5u]], [[4g5w]], [[3v23]], [[3v25]], [[3v27]], [[3v29]], [[3v2d]], [[3v2f]], [[4dha]], [[4dhc]], [[4abs]], [[3uz1]], [[3uz2]], [[3uz8]], [[3uz9]], [[3uzf]], [[3uzh]], [[3uzk]], [[3uzn]], [[3uye]], [[3uyg]], [[3tve]], [[3tvh]], [[3uxq]], [[3uxr]], [[3zvp]] - TtRPL29 in 50S subunit+5S RRNA+23S RRNA<br /> |
[[3fin]] - TtRPL29 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> | [[3fin]] - TtRPL29 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> | ||
[[2wwq]] – EcRPL29 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – ''Escherichia coli''<br /> | [[2wwq]] – EcRPL29 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – ''Escherichia coli''<br /> | ||
| - | [[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3oas]], [[3oat]], [[3ofd]], [[3og0]], [[3ofq]], [[1vt2]], [[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny ]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA<br /> | + | [[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3oas]], [[3oat]], [[3ofd]], [[3og0]], [[3ofq]], [[1vt2]], [[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny]], [[3j4x]], [[3j50]], [[3j51]], [[3j52]], [[3j54]], [[3j56]], [[3j58]], [[3j5a]], [[3j5c]], [[3j5e]], [[3j5g]], [[3j5i]], [[3j5k]], [[4kix]], [[4kiz]], [[4kj1]], [[4kj3]], [[4kj5]], [[4kj7]], [[4kj9]], [[4kjb]], [[3uos]], [[3sgf]], [[3r8s]], [[3r8t]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA<br /> |
| - | [[3fik]], [[2gya]], [[2gyc]], [[3bbx]], [[1p85]], [[1p86]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> | + | [[3fik]], [[2gya]], [[2gyc]], [[3bbx]], [[1p85]], [[1p86]], [[3j37]], [[3j19]], [[3j0t]], [[3j0w]], [[3j0y]], [[3j11]], [[3j12]], [[3j14]], [[3izu]], [[3izt]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br /> |
[[3kcr]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase<br /> | [[3kcr]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase<br /> | ||
[[3bbo]] - RPL29 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach<br /> | [[3bbo]] - RPL29 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach<br /> | ||
[[2zjq]], [[2zjr]], [[1nkw]] - DrRPL29 in 50S subunit+5S RRNA+23S RRNA – ''Deinococcus radiodurans''<br /> | [[2zjq]], [[2zjr]], [[1nkw]] - DrRPL29 in 50S subunit+5S RRNA+23S RRNA – ''Deinococcus radiodurans''<br /> | ||
| - | [[1jj2]], [[1ffk]] - HmRPL29P in 50S subunit+5S RRNA+23S RRNA]] - ''Haloarcula marismortui'' | + | [[1jj2]], [[1ffk]] - HmRPL29P in 50S subunit+5S RRNA+23S RRNA]] - ''Haloarcula marismortui''<br /> |
| + | [[3j3w]], [[3j3v]] - RPL29 in 50S subunit+23S RRNA – ''Bacillus subtilis'' – Cryo-EM<br /> | ||
===L29 in 50S subunit + antibiotics=== | ===L29 in 50S subunit + antibiotics=== | ||
| - | [[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - DrRPL29 in 50S subunit+5S RRNA+23S RRNA+ | + | [[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]], [[4io9]], [[4ioa]], [[4ioc]] - DrRPL29 in 50S subunit+5S RRNA+23S RRNA +antibiotics <br /> |
| - | [[2qam]], [[2qao]], [[2qba]], [[2qbc]], [[2qoz]], [[2qp1]], [[3ofc]], [[3ofz]], [[3ofr]], [[3orb]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+ | + | [[2qam]], [[2qao]], [[2qba]], [[2qbc]], [[2qoz]], [[2qp1]], [[3ofc]], [[3ofz]], [[3ofr]], [[3orb]], [[4gar]], [[4gau]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+antibiotics<br /> |
| - | [[3oh5]], [[3oh7]], [[3ohj]], [[3ohk]], [[3ohz]], [[3oi1]], [[3oi3]], [[3oi5]] - TtRPL29 in 50S subunit+5S RRNA+23S RRNA+ | + | [[3oh5]], [[3oh7]], [[3ohj]], [[3ohk]], [[3ohz]], [[3oi1]], [[3oi3]], [[3oi5]], [[4l6l]], [[4l6j]] - TtRPL29 in 50S subunit+5S RRNA+23S RRNA+antibiotics<br /> |
| - | [[1k73]], [[1kc8]], [[1k8a]], [[1k9m]], [[1kd1]], [[1m1k]], [[3cxc]] - HmRPL29P in 50S subunit+5S RRNA+23S RRNA+ | + | [[1k73]], [[1kc8]], [[1k8a]], [[1k9m]], [[1kd1]], [[1m1k]], [[3cxc]] - HmRPL29P in 50S subunit+5S RRNA+23S RRNA+antibiotics <br /> |
[[1m90]] - HmRPL29P in 50S subunit+5S RRNA+23S RRNA+ sparsomycin+CCA-Phe-caproic acid-biotin | [[1m90]] - HmRPL29P in 50S subunit+5S RRNA+23S RRNA+ sparsomycin+CCA-Phe-caproic acid-biotin | ||
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[[2vhm]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br /> | [[2vhm]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br /> | ||
[[2j28]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br /> | [[2j28]] - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br /> | ||
| + | [[3j01]], [[3kcr]] – EcRPL29 in 50S subunit+5S RRNA+23S RRNA+ preprotein translocase<br /> | ||
| + | [[1w2b]] - HmRPL29P in 50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal | ||
| + | |||
| + | ===L29 in part of the 50S subunit=== | ||
| + | |||
[[2vrh]] – EcRPL29 + RPL23 + RPL24 + trigger factor<br /> | [[2vrh]] – EcRPL29 + RPL23 + RPL24 + trigger factor<br /> | ||
[[2d3o]] - EcRPL29 + RPL23 + RPL24 + 23S RRNA + trigger factor<br /> | [[2d3o]] - EcRPL29 + RPL23 + RPL24 + 23S RRNA + trigger factor<br /> | ||
| - | [[ | + | [[3j45]], [[3j46]] - EcRPL29 + RPL23 + RPL24 + 23S RRNA + SECY + SECE + SECG – Cryo EM<br /> |
| - | [[ | + | [[2aar]] - DrRPL29 + RPL23 + 23S RRNA + trigger factor<br /> |
===L29 in the 60S subunit=== | ===L29 in the 60S subunit=== | ||
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[[3o5h]], [[3o58]] - yRPL29 in 60S subunit+5S RRNA+25S RRNA+5.8S RRNA – yeast<br /> | [[3o5h]], [[3o58]] - yRPL29 in 60S subunit+5S RRNA+25S RRNA+5.8S RRNA – yeast<br /> | ||
[[1s1i]] - yRPL29 in 60S subunit+5S RRNA+5.8S RRNA – Cryo EM<br /> | [[1s1i]] - yRPL29 in 60S subunit+5S RRNA+5.8S RRNA – Cryo EM<br /> | ||
| - | [[3izr]] – wRPL29 in the 60S subunit – wheat | + | [[3izs]] - yRPL29 in 60S subunit + P1 + P2 - Cryo EM<br /> |
| + | [[3u5e]], [[3u5i]] - yRPL29 in 60S subunit <br /> | ||
| + | [[4b6a]] - yRPL29 in 60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br /> | ||
| + | [[3izr]] – wRPL29 in the 60S subunit – wheat <br /> | ||
| + | [[4a18]], [[4a19]], [[4a1b]], [[4a1d]] - RPL29 in 60S subunit+26S RRNA + EIF-6 – ''Tetrahymena thermophila''<br /> | ||
| + | [[3j3b]] - RPL29 in 60S subunit + P0 + P1 + P2 - human - Cryo EM<br /> | ||
| + | [[3j39]] - RPL29 in 60S subunit + P0 – ''Drosophila melanogaster'' - Cryo EM<br /> | ||
===L29 in large + small ribosomal subunit=== | ===L29 in large + small ribosomal subunit=== | ||
Revision as of 12:02, 14 November 2013
Ribosomal protein L29 (RPL29) is one of the 34 proteins which belong to the large 50S subunit of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome. RPL29 binds heparin and as such has a secondary function besides protein biosynthesis.
3D Structures of Ribosomal protein L29
Updated on 14-November-2013
RPL29
1r73 – RPL29 – Thermotoga maritime - NMR
L29 in 50S subunit+RNA
2xg0, 2xg2, 3kir, 3kit, 3kiw, 3kiy, 4byc, 4bye – TtRPL29 in 50S subunit+RNA fragments - Thermus thermophilus
2x9s, 2x9u, 3kni, 3knk, 3knm, 3kno, 2wrj, 2wrl, 2wro, 2wrr, 3hux, 3huz, 2wh2, 2wh4, 2wdi, 2wdj, 2wdl, 2wdn, 1vsp, 2v47 , 2v49, 1vsa, 2hgj, 2hgq, 2hgu, 2j01, 2j03, 1yl3, 3mrz, 3ms1, 3i8f, 3i8i, 3i9c, 3i9e, 3f1f, 3f1h, 3d5b, 3d5d, 2b66, 2b9n, 2b9p, 1giy, 2y0v, 2y0x, 2y0z, 2y11, 2y13, 2y15, 2y17, 2y19, 3pyo, 3pyr, 3pyt, 3pyv, 2xtg, 2xux, 2xqe, 4btd, 4kfi, 4kfl, 4kbu, 4kbw, 4kcz, 4kd2, 4kd9, 4kdb, 4kdh, 4kdk, 4k0m, 4k0q, 4jux, 4ejb, 4ejc, 3v6x, 3v6w, 4b8g, 4b8i, 3zn9, 3zne, 4g5l, 4g5n, 4g5u, 4g5w, 3v23, 3v25, 3v27, 3v29, 3v2d, 3v2f, 4dha, 4dhc, 4abs, 3uz1, 3uz2, 3uz8, 3uz9, 3uzf, 3uzh, 3uzk, 3uzn, 3uye, 3uyg, 3tve, 3tvh, 3uxq, 3uxr, 3zvp - TtRPL29 in 50S subunit+5S RRNA+23S RRNA
3fin - TtRPL29 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM
2wwq – EcRPL29 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – Escherichia coli
3i1n, 3i1p, 3i1r, 3i1t, 3i20, 3i22, 3e1b, 3e1d, 3df2, 3df4, 2vhn, 2qov, 2qox, 2i2t, 2i2v, 1vs6, 1vs8, 2aw4, 2awb, 3oas, 3oat, 3ofd, 3og0, 3ofq, 1vt2, 1vor, 1vou, 1vow, 1voy, 1vp0, 1pnu, 1pny, 3j4x, 3j50, 3j51, 3j52, 3j54, 3j56, 3j58, 3j5a, 3j5c, 3j5e, 3j5g, 3j5i, 3j5k, 4kix, 4kiz, 4kj1, 4kj3, 4kj5, 4kj7, 4kj9, 4kjb, 3uos, 3sgf, 3r8s, 3r8t - EcRPL29 in 50S subunit+5S RRNA+23S RRNA
3fik, 2gya, 2gyc, 3bbx, 1p85, 1p86, 3j37, 3j19, 3j0t, 3j0w, 3j0y, 3j11, 3j12, 3j14, 3izu, 3izt - EcRPL29 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM
3kcr - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase
3bbo - RPL29 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach
2zjq, 2zjr, 1nkw - DrRPL29 in 50S subunit+5S RRNA+23S RRNA – Deinococcus radiodurans
1jj2, 1ffk - HmRPL29P in 50S subunit+5S RRNA+23S RRNA]] - Haloarcula marismortui
3j3w, 3j3v - RPL29 in 50S subunit+23S RRNA – Bacillus subtilis – Cryo-EM
L29 in 50S subunit + antibiotics
3dll, 2zjp, 3cf5, 1xbp, 1sm1, 1nwx, 1nwy, 3pio, 3pip, 4io9, 4ioa, 4ioc - DrRPL29 in 50S subunit+5S RRNA+23S RRNA +antibiotics
2qam, 2qao, 2qba, 2qbc, 2qoz, 2qp1, 3ofc, 3ofz, 3ofr, 3orb, 4gar, 4gau - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+antibiotics
3oh5, 3oh7, 3ohj, 3ohk, 3ohz, 3oi1, 3oi3, 3oi5, 4l6l, 4l6j - TtRPL29 in 50S subunit+5S RRNA+23S RRNA+antibiotics
1k73, 1kc8, 1k8a, 1k9m, 1kd1, 1m1k, 3cxc - HmRPL29P in 50S subunit+5S RRNA+23S RRNA+antibiotics
1m90 - HmRPL29P in 50S subunit+5S RRNA+23S RRNA+ sparsomycin+CCA-Phe-caproic acid-biotin
L29 in 50S subunit + ribosome releasing factor (RRF)
2qbe, 2qbg, 2qbi, 2qbk, 2z4l, 2z4n - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+RRF
2rdo - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM
L29 in 50S subunit + various proteins
2vhm - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix
2j28 - EcRPL29 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM
3j01, 3kcr – EcRPL29 in 50S subunit+5S RRNA+23S RRNA+ preprotein translocase
1w2b - HmRPL29P in 50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal
L29 in part of the 50S subunit
2vrh – EcRPL29 + RPL23 + RPL24 + trigger factor
2d3o - EcRPL29 + RPL23 + RPL24 + 23S RRNA + trigger factor
3j45, 3j46 - EcRPL29 + RPL23 + RPL24 + 23S RRNA + SECY + SECE + SECG – Cryo EM
2aar - DrRPL29 + RPL23 + 23S RRNA + trigger factor
L29 in the 60S subunit
3o5h, 3o58 - yRPL29 in 60S subunit+5S RRNA+25S RRNA+5.8S RRNA – yeast
1s1i - yRPL29 in 60S subunit+5S RRNA+5.8S RRNA – Cryo EM
3izs - yRPL29 in 60S subunit + P1 + P2 - Cryo EM
3u5e, 3u5i - yRPL29 in 60S subunit
4b6a - yRPL29 in 60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM
3izr – wRPL29 in the 60S subunit – wheat
4a18, 4a19, 4a1b, 4a1d - RPL29 in 60S subunit+26S RRNA + EIF-6 – Tetrahymena thermophila
3j3b - RPL29 in 60S subunit + P0 + P1 + P2 - human - Cryo EM
3j39 - RPL29 in 60S subunit + P0 – Drosophila melanogaster - Cryo EM
L29 in large + small ribosomal subunit
1ml5 - EcRPL29 in 50S ribosomal subunit+30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA – EM
