This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
JMS/sandboxBarkai
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
<StructureSection load='1mbn' size='350' side='right' caption='myoglobin - how the chain cradles the heme (PDB entry [[1mbn]])' scene='55/557585/Align_test/5'> | <StructureSection load='1mbn' size='350' side='right' caption='myoglobin - how the chain cradles the heme (PDB entry [[1mbn]])' scene='55/557585/Align_test/5'> | ||
| - | It comes down to <scene name='55/557585/Align_test/18'>eight divergent amino acids (elephant's amino acids in yellow halos)</scene>. Without these amino acids, myoglobin in both whale and elephants has a charge of ''+1''. With them, whale myoglobin has | + | It comes down to <scene name='55/557585/Align_test/18'>eight divergent amino acids (elephant's amino acids in yellow halos, whale next to it, without halos)</scene>. Without these amino acids, myoglobin in both whale and elephants has a charge of ''+1''. With them, whale myoglobin has net charge of ''+4'', which is significantly higher than elephants' ''+2''. Importantly, all eight of these divergent amino acids are <scene name='52/523344/Elephantwhale/34'>surface residues</scene>. |
| - | + | These eight can be visualized: (summing up the total charge of the protein) <scene name='52/523344/Elephantwhale/19'>residue position 8</scene> (<span style="color:red">'''glu'''</span> in elephents versus gln in whales), <scene name='52/523344/Elephantwhale/21'>12</scene> (<span style="color:blue">'''lys'''</span> vs. <span style="color:lightblue">'''his'''</span>), <scene name='52/523344/Elephantwhale/22'>27</scene> (thr vs. <span style="color:red">'''asp'''</span>), <scene name='52/523344/Elephantwhale/23'>34</scene> (thr vs. <span style="color:blue">'''lys'''</span> ), <scene name='52/523344/Elephantwhale/24'>87</scene> (gln vs. <span style="color:blue">'''lys'''</span> ), <scene name='52/523344/Elephantwhale/26'>116</scene> (gln vs. <span style="color:lightblue">'''his'''</span>), <scene name='52/523344/Elephantwhale/27'>132</scene> (<span style="color:blue">'''lys'''</span> vs. asn), <scene name='52/523344/Elephantwhale/28'>140</scene> (asn vs. <span style="color:blue">'''lys'''</span> ). | |
</StructureSection> | </StructureSection> | ||
Revision as of 14:46, 25 December 2013
| |||||||||||
