Ann Taylor/Hemoglobin
From Proteopedia
(Difference between revisions)
Line 2: | Line 2: | ||
'''Hemoglobin''' is an oxygen-transport protein. Hemoglobin is an [[allosteric protein]]. It is a tetramer composed of two types of subunits designated α and β, with stoichiometry <scene name='Hemoglobin/Alpha2beta2/7'>α2β2</scene>. The <scene name='Hemoglobin/Foursubunits/5'>four subunits</scene> of hemoglobin sit roughly at the corners of a tetrahedron, facing each other across a <scene name='57/576710/Cavity/1'>cavity</scene> at the center of the molecule. Each of the subunits <scene name='Hemoglobin/Bbsubunitswithheme/5'>contains a heme</scene> prosthetic group. The <scene name='Hemoglobin/4heme/3'>heme molecules</scene> give hemoglobin its red color. | '''Hemoglobin''' is an oxygen-transport protein. Hemoglobin is an [[allosteric protein]]. It is a tetramer composed of two types of subunits designated α and β, with stoichiometry <scene name='Hemoglobin/Alpha2beta2/7'>α2β2</scene>. The <scene name='Hemoglobin/Foursubunits/5'>four subunits</scene> of hemoglobin sit roughly at the corners of a tetrahedron, facing each other across a <scene name='57/576710/Cavity/1'>cavity</scene> at the center of the molecule. Each of the subunits <scene name='Hemoglobin/Bbsubunitswithheme/5'>contains a heme</scene> prosthetic group. The <scene name='Hemoglobin/4heme/3'>heme molecules</scene> give hemoglobin its red color. | ||
- | The α and β subunits have very similar structures, despite their sequence differences. We will use a single <scene name='57/576710/A_subunit_rainbow/1'>α chain</scene> to examine the subunit structure more closely. The 6 major and 2 short α-helices that make up the structure of a Hb subunit (the "globin fold") are <scene name='57/576710/A_subunit_labelled_helices/1'>labeled A through H</scene>, which is the traditional naming scheme. The helices form an approximately-cylindrical bundle, with the heme and its central Fe atom bound in a <scene name='57/576710/Hydrophobic_pocket/1'>hydrophobic pocket</scene> (hydrophobic = grey; hydrophilic = purple). The proximal histidine (the tightest protein-Fe intraction) is often called <scene name='57/576710/His_f9/1'>His F9</scene>, since it is residue 9 on helix F (it is residue 87 in the human α chain). A second histidine is near the bound oxygen. In the deoxy state, the Fe2+ is <scene name='57/576710/Deoxy_non_planarity/1'>below the plane</scene> of the porphyrin ring. When oxygen is bound, the iron changes spin state, resulting in the iron moving <scene name='57/576710/Oxy_fe_planarity/2'>into the plane</scene> of the heme. | + | The α and β subunits have very similar structures, despite their sequence differences. We will use a single <scene name='57/576710/A_subunit_rainbow/1'>α chain</scene> to examine the subunit structure more closely. The 6 major and 2 short α-helices that make up the structure of a Hb subunit (the "globin fold") are <scene name='57/576710/A_subunit_labelled_helices/1'>labeled A through H</scene>, which is the traditional naming scheme. The helices form an approximately-cylindrical bundle, with the heme and its central Fe atom bound in a <scene name='57/576710/Hydrophobic_pocket/1'>hydrophobic pocket</scene> (hydrophobic = grey; hydrophilic = purple). The proximal histidine (the tightest protein-Fe intraction) is often called <scene name='57/576710/His_f9/1'>His F9</scene>, since it is residue 9 on helix F (it is residue 87 in the human α chain). A second histidine is near the bound oxygen, and is referred to as the <scene name='57/576710/Distal_his/1'>distal histidine</scene>. In the deoxy state, the Fe2+ is <scene name='57/576710/Deoxy_non_planarity/1'>below the plane</scene> of the porphyrin ring. When oxygen is bound, the iron changes spin state, resulting in the iron moving <scene name='57/576710/Oxy_fe_planarity/2'>into the plane</scene> of the heme. |
Line 9: | Line 9: | ||
==Hemoglobin subunit binding O<sub>2</sub>== | ==Hemoglobin subunit binding O<sub>2</sub>== | ||
- | For hemoglobin to function as an oxygen-carrier in the blood, it must have an equilibrium between the two main states of its quaternary structure, the unliganded "deoxy" or "T state" versus the liganded "oxy" or "R state". The unliganded (deoxy) form is called the "T" (for "tense") state because it contains extra stabilizing interactions between the subunits. In the high | + | For hemoglobin to function as an oxygen-carrier in the blood, it must have an equilibrium between the two main states of its quaternary structure, the unliganded "deoxy" or "T state" versus the liganded "oxy" or "R state". The unliganded (deoxy) form is called the "T" (for "tense") state because it contains extra stabilizing interactions between the subunits, specifically <scene name='57/576710/Deoxy_salt_bridges/1'>ionic interactions</scene>. In the high oxygen affinity R-state conformation, these ionic interactions <scene name='57/576710/Oxy_ionic_interactions/1'>are lost</scene>, and the tetramer is described as "relaxed". In some organisms this difference is so pronounced that their Hb molecules dissociate into dimers in the oxygenated form. Structural changes that occur during this transition can illuminate how such changes result in important functional properties, such as cooperativity of oxygen binding and allosteric control by pH and anions. |
=='''Content Donators'''== | =='''Content Donators'''== | ||
Much of this page's content originally came from the [[Hemoglobin]] page. To ensure stability during my class and to include some specific data we will be using in a paper discussion, this page was created. | Much of this page's content originally came from the [[Hemoglobin]] page. To ensure stability during my class and to include some specific data we will be using in a paper discussion, this page was created. |
Revision as of 19:46, 27 January 2014
|