This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Hemoglobin 3D structures
From Proteopedia
| Line 12: | Line 12: | ||
[[1qsh]], [[1qsi]] - hHb α+β+ Mg containing heme<br /> | [[1qsh]], [[1qsi]] - hHb α+β+ Mg containing heme<br /> | ||
[[2w6v]] - hHb α+β+Xe<br /> | [[2w6v]] - hHb α+β+Xe<br /> | ||
| - | [[1xy0]], [[1xz5]], [[1xzu]], [[1xzv]], [[1y0a]], [[1y0c]], [[1y0t]], [[1y0w]], [[1y22]], [[1y2z]], [[1y31]], [[1y35]], [[1y45]], [[1y46]], [[1y4b]], [[1y4f]], [[1y4g]], [[1y4p]], [[1y4q]], [[1y4r]], [[1y4v]], [[1xye]], [[1xz4]], [[1xz7]], [[1y09]], [[1y0d]], [[1o1j]], [[1o1k]], [[1o1l]], [[1o1m]], [[1o1n]], [[1o1o]], [[1o1p]], [[1j7s]], [[1j7w]], [[1j7y]], [[1c7b]], [[1c7c]], [[1c7d]], [[1ch4]], [[1bzz]], [[6hbw]], [[1abw]], [[1a30]], [[1a00]], [[1a01]], [[1a0u]], [[1a0z]], [[1gbu]], [[1gli]], [[1hdb]], [[1dxt]], [[1dxu]], [[1dxv]] - hHb α+β (mutant)<br /> | + | [[1xy0]], [[1xz5]], [[1xzu]], [[1xzv]], [[1y0a]], [[1y0c]], [[1y0t]], [[1y0w]], [[1y22]], [[1y2z]], [[1y31]], [[1y35]], [[1y45]], [[1y46]], [[1y4b]], [[1y4f]], [[1y4g]], [[1y4p]], [[1y4q]], [[1y4r]], [[1y4v]], [[1xye]], [[1xz4]], [[1xz7]], [[1y09]], [[1y0d]], [[1o1j]], [[1o1k]], [[1o1l]], [[1o1m]], [[1o1n]], [[1o1o]], [[1o1p]], [[1j7s]], [[1j7w]], [[1j7y]], [[1c7b]], [[1c7c]], [[1c7d]], [[1ch4]], [[1bzz]], [[6hbw]], [[1abw]], [[1a30]], [[1a00]], [[1a01]], [[1a0u]], [[1a0z]], [[1gbu]], [[1gli]], [[1hdb]], [[1dxt]], [[1dxu]], [[1dxv]], [[4mqh]], [[4mqi]] - hHb α+β (mutant)<br /> |
[[1bz0]] - hHb α+β A<br /> | [[1bz0]] - hHb α+β A<br /> | ||
[[1cbl]] - hHb α+β β4<br /> | [[1cbl]] - hHb α+β β4<br /> | ||
| Line 57: | Line 57: | ||
[[3lhb]], [[1f5o]], [[1uc3]] - SlHb α+β – Sea lamprey<br /> | [[3lhb]], [[1f5o]], [[1uc3]] - SlHb α+β – Sea lamprey<br /> | ||
[[1hds]] - Hb α+β S – white-tail deer<br /> | [[1hds]] - Hb α+β S – white-tail deer<br /> | ||
| + | [[4h2l]] - Hb α+β – deer mouse<br /> | ||
[[2b7h]] - Hb α+β - crab-eating fox<br /> | [[2b7h]] - Hb α+β - crab-eating fox<br /> | ||
[[3lqd]] - Hb α+β - European hare<br /> | [[3lqd]] - Hb α+β - European hare<br /> | ||
[[3at5]], [[3at6]] – Hb α+β – ''Podocnemis unifilis''<br /> | [[3at5]], [[3at6]] – Hb α+β – ''Podocnemis unifilis''<br /> | ||
| - | [[3vre]], [[3vrg]] - maHb α+β – mammoth | + | [[3vre]], [[3vrg]] - maHb α+β – mammoth<br /> |
| + | [[3wr1]] - Hb α+β - cormorant<br /> | ||
| + | |||
| + | ===Hb α+γ-2=== | ||
| + | |||
| + | [[4mqj]] - hHb α+γ-2<br /> | ||
| + | [[4mqk]] - hHb α+γ-2 (mutant)<br /> | ||
===hHb variants=== | ===hHb variants=== | ||
| Line 93: | Line 100: | ||
[[1gcv]] – MgHb - ''Mustelus griseus''<br /> | [[1gcv]] – MgHb - ''Mustelus griseus''<br /> | ||
[[1vhb]] – VsHb – ''Vitreoscilla stercoraria''<br /> | [[1vhb]] – VsHb – ''Vitreoscilla stercoraria''<br /> | ||
| + | [[4vhb]] – VsHb + SCN<br /> | ||
[[1hlb]], [[1hlm]] – Hb – ''Caudina arenicola''<br /> | [[1hlb]], [[1hlm]] – Hb – ''Caudina arenicola''<br /> | ||
[[2hbg]] - GdHb – ''Glycera dibranchiata''<br /> | [[2hbg]] - GdHb – ''Glycera dibranchiata''<br /> | ||
| Line 165: | Line 173: | ||
[[1coh]] - - hHb α+β Co containing heme + CO<br /> | [[1coh]] - - hHb α+β Co containing heme + CO<br /> | ||
[[1hab]], [[1hac]], [[1sdk]], [[1sdl]] - hHb α+β A crosslinked + CO<br /> | [[1hab]], [[1hac]], [[1sdk]], [[1sdl]] - hHb α+β A crosslinked + CO<br /> | ||
| - | [[3nl7]], [[3nml]], [[3nmm]], [[1yvq]], [[1yvt]], [[1yff]], [[1aj9]], [[1rvw]], [[3qjb]], [[3qjc]], [[3qjd]], [[3qje]], [[3s66]] | + | [[3nl7]], [[3nml]], [[3nmm]], [[1yvq]], [[1yvt]], [[1yff]], [[1aj9]], [[1rvw]], [[3qjb]], [[3qjc]], [[3qjd]], [[3qje]], [[3s66]], [[4mqc]], [[4mqg]] - hHb α+β (mutant) + CO<br /> |
[[1k1k]] - hHb α+β C (mutant) + CO<br /> | [[1k1k]] - hHb α+β C (mutant) + CO<br /> | ||
[[1r1x]] - hHb α+β Bassett (mutant) + CO<br /> | [[1r1x]] - hHb α+β Bassett (mutant) + CO<br /> | ||
| Line 263: | Line 271: | ||
[[3ovu]] – hHb α + α-Hb-stabilizing protein + iron-regulated surface determinant protein H<br /> | [[3ovu]] – hHb α + α-Hb-stabilizing protein + iron-regulated surface determinant protein H<br /> | ||
[[3szk]], [[3s48]] - hHb α + iron-regulated surface determinant protein H<br /> | [[3szk]], [[3s48]] - hHb α + iron-regulated surface determinant protein H<br /> | ||
| - | [[4fc3]] - hHb α+β + iron-regulated surface determinant protein H<br /> | + | [[4fc3]], [[4ij2]] - hHb α+β + iron-regulated surface determinant protein H<br /> |
[[4f4o]] - pHb α+β + haptoglobin | [[4f4o]] - pHb α+β + haptoglobin | ||
Revision as of 11:48, 16 March 2014
Updated on 16-March-2014
Contents |
Hb α+β
3mkb – Hb α+β – Mako shark
3mjp - Hb α+β - Japanese quail
3mju - pHb α+β - pigeon
3odq, 3kmf, 3dut, 2dn2, 1xxt, 1xz2, 1rq3, 1uiw, 1kd2, 1lfl, 1dke, 1qi8, 1a3n, 2hhd, 2hhe, 1hga, 1hgb, 1hgc, 2hhb, 3hhb, 4hhb, 2hbs, 1a3o, 1hbs, 3p5q - hHb α+β human
2dxm - hHb α+β – neutron
2h35 - hHb α+β – NMR
1fn3, 1nih - hHb α+β+ Ni containing heme
1qsh, 1qsi - hHb α+β+ Mg containing heme
2w6v - hHb α+β+Xe
1xy0, 1xz5, 1xzu, 1xzv, 1y0a, 1y0c, 1y0t, 1y0w, 1y22, 1y2z, 1y31, 1y35, 1y45, 1y46, 1y4b, 1y4f, 1y4g, 1y4p, 1y4q, 1y4r, 1y4v, 1xye, 1xz4, 1xz7, 1y09, 1y0d, 1o1j, 1o1k, 1o1l, 1o1m, 1o1n, 1o1o, 1o1p, 1j7s, 1j7w, 1j7y, 1c7b, 1c7c, 1c7d, 1ch4, 1bzz, 6hbw, 1abw, 1a30, 1a00, 1a01, 1a0u, 1a0z, 1gbu, 1gli, 1hdb, 1dxt, 1dxu, 1dxv, 4mqh, 4mqi - hHb α+β (mutant)
1bz0 - hHb α+β A
1cbl - hHb α+β β4
1bij, 1cls - hHb α+β A crosslinked
1fdh - hHb α+β F
2hbs - hHb α+β S (mutant)
3b75 - hHb α+β + glucose
2d5z, 2d60 - hHb α+β + L35
2w72 - Hb α+β (mutant)+Xe
3ic0, 3ic2, 1qxd, 1qxe, 3r5i - hHb α+β + antisickling agent
1k0y - hHb α+β + sites-linking compound
1g9v, 4l7y - hHb α+β + allosteric effector
1b86, 3wcp - hHb α+β + phosphoglycerate
3ia3 - hHb α+α –Hb stabilizing protein
1z8u, 1y01 - hHb α+α–Hb stabilizing protein (mutant)
3pi8, 3pi9, 3pia, 2qsp, 2qss, 1hda - bHb α+β bovine
3pel, 3gou, 2qls - Hb α+β dog
3ng6, 3nfe, 2aa1 - TnHb α+β Trematomus newnesi
3hyu - GpHb α+β - Guinea pig
3dht - rHb α+β – rat
3gys, 3gqp, 3d4x, 3gqr - Hb α+β– cat
3gdj - Hb α+β – camel
3eu1, 3d1a - gHb α+β – goat
3cy5 - Hb α+β – buffalo
2zlt, 2zlu, 2zlv, 2zlw, 2zlx, 1y8h, 1y8i, 1y8k, 1ns6, 1ibe, 2dhb - hoHb α+β – horse
3k8b - tHb α+β
3eok - Hb α+β – duck
2zfb - Hb α+β - parrot
3a59 - osHb α+β – ostrich
3hrw - mHb α+β – mouse
3bom - trHb α+β - trout
1out -trHb α+β (mutant)
2peg, 2h8d, 2h8f, 1s5x, 1s5y, 1hbh - ErHb α+β - Emerald rockcod
2c0k - Hb α+β – botfly
1s0h - Hb α+β – donkey
1wmu, 1v75 - GgHb α+βD- Geochelone gigantean
1v4w, 1v4x - BtHb α+β Bluefin tuna
1it2 - haHb α+β - hagfish
1fhj - Hb α+β – wolf
1hv4 - BgHb α+β – Bar-headed goose
1cg5 - RsHb α+β – Red stingray
1hbr - cHb α+β D – chicken
3bev – cHb α + MHC I + β-microglobulin
3lhb, 1f5o, 1uc3 - SlHb α+β – Sea lamprey
1hds - Hb α+β S – white-tail deer
4h2l - Hb α+β – deer mouse
2b7h - Hb α+β - crab-eating fox
3lqd - Hb α+β - European hare
3at5, 3at6 – Hb α+β – Podocnemis unifilis
3vre, 3vrg - maHb α+β – mammoth
3wr1 - Hb α+β - cormorant
Hb α+γ-2
4mqj - hHb α+γ-2
4mqk - hHb α+γ-2 (mutant)
hHb variants
2yrs - hHb D Los Angeles α+β
1r1y - hHb α+β Bassett
1bab - hHb α+β Thionville
1hba, 1hbb - hHb α+β Rothschild
1cmy - hHb α+β Ypsilanti + CO
Hb ζ
3w4u - hHb ζ+β
Hb
2ksc, 1mwb – Hb – Synechococcus – NMR
2r50 - Hb – corn
2zwj, 1x3k, 3arj, 3ark, 3arl - TaHb V – Tokunagayusurika akamusi
1x46 – TaHb VII
3ogb, 2w6x, 2w6y – SwHb (mutant) – Sperm whale
3lb1, 3lb2, 3lb3, 3lb4 – dehaloperoxidase AoHb+inhibitor – Amphitrite ornate
3k3u - dehaloperoxidase AoHb (mutant)
2xyk – 2-on-2 Hb – Agrobacterium tumefaciens
2hz1, 1rtx – SyHb – Synechocystis
2hz3 – SyHb (mutant)
2gnv, 2gnw – rHb (mutant) – rice
1d8u – rHb
2bmm – Hb – Thermobifida fusca
2bk9 – DmHb - Drosophila melanogaster
1kfr, 1h97 – Hb – Paramphistomum epiclitum
1gcv – MgHb - Mustelus griseus
1vhb – VsHb – Vitreoscilla stercoraria
4vhb – VsHb + SCN
1hlb, 1hlm – Hb – Caudina arenicola
2hbg - GdHb – Glycera dibranchiata
3qqq – Hb non-symbiotic – Poison peach
3qqr – Hb non-legume – Parasponia andersonii
Mini Hb
2xkg, 2xkh, 2xki, 2vyy, 2vyz, 4f68, 4f69, 4f6b, 4f6d, 4f6f, 4f6g, 4f6i, 4f6j – ClMiHb (mutant) – Cerebratulus lacteus
4avd – ClMiHb + CO
4ave – ClMiHb
Giant Hb
1x9f – GiHb+CO – Lumbricus terrestris
2zs0, 2zs1, 2zfo, 2d2m, 2d2n – GiHb+O2 – Beard worm
1yhu – GiHb+O2 – Tube worm
Truncated Hb
1dlw – TrHb – Paramecium caudatum
2bkm - TrHb +O2 - Geobacillus stearothermophilus
1idr – MtTrHb + O2 - Mycobacterium tuberculosis
2ig3 – TrHb III +CN – Campylobacter jejuni
1ux8 – TrHb+CN – Bacillus subtilis
1rte, 1s56 – MtTrHb + CN
1s61 – MtTrHb+ butyl-isocyanide
1uvx, 1uvy – TrHb + CN – Chlamydomonas moewusii
3aq5 – TpHb+ O2 – Tetrahymena pyriformis
3aq6 – TpHb III
3aq7, 3aq8 - TpHb III (mutant
MetHb α+β
3gqg - roMetHb α+β
3dhr - pMetHb α+β
3hf4 - rMetHb α+β
2ri4 - gMetHb α+β
2r1h - trMetHb α+β
1ns9, 2mhb - hoMetHb α+β
2qu0 - MetHb α+β – sheep
2pgh - MetHb α+β - pig
3bj1, 3bj2, 3bj3, 1xq5 - MetHb α+β – yellow perch
2hz2 – SyMetHb (mutant)
1dtm, 1duo - SwMdetHb (mutant) + methylimidazole
1duk - SwMdetHb
1jy7, 1bz1 - hMetHb α+β
1vwt - hMetHb α+β (mutant)
1c40 - BgMetHb α+β
1moh - LpMetHb + H2S - Lucina pectinata
1flp, 3pi1, 3pi2, 3pi3, 3pi4 – LpMetHb
LegHb
1lh1, 1lh2, 1lh3, 1lh5, 1lh6, 1lh7, 2lh1, 2lh2, 2lh3, 2lh5, 2lh6, 2lh7, 1gdj – LlLegHb – Lupinus luteus
2gdm – LlLegHb + O2
1gdi – LlLegHb + CO
1gdl – LlLegHb + NO
1gdk – LlLegHb + isoquinoline
1bin – SoLegHb – Soybean
1fsl – SoLegHb + nicotinate
Hb α+β + CO
3gkv - roHb α+β + CO – rockcod
3d1k, 1la6, 1t1n - TnHb α+β + CO
3d17, 1yzi, 1j3y, 1j3z, 1j40, 1j41, 1ljw, 1ird, 1bbb, 1hco, 2hco, 2dn3, 3s65 - hHb α+β + CO
1mko - hHb α+β A + CO
1cbm - hHb α+β β4 + CO
1nej - hHb α+β S + CO
1m9p - hHb α+β C + CO
1coh - - hHb α+β Co containing heme + CO
1hab, 1hac, 1sdk, 1sdl - hHb α+β A crosslinked + CO
3nl7, 3nml, 3nmm, 1yvq, 1yvt, 1yff, 1aj9, 1rvw, 3qjb, 3qjc, 3qjd, 3qje, 3s66, 4mqc, 4mqg - hHb α+β (mutant) + CO
1k1k - hHb α+β C (mutant) + CO
1r1x - hHb α+β Bassett (mutant) + CO
1i3d - hHb α+β Bart’s + CO
1a9w - hHb α+β Gower II + CO
1iwh - hoHb α+β +CO
2d5x - hoHb α+β + CO + L35
3hxn - hHb α+β +CO+inositol hexakisphosphate
1jeb – hHb/mHb α+β +CO
2z6n - GgHb α+β +CO
1v4u - BtHb α+β
3a9m, 3a5a, 3a5b, 3a5g – TaHb V+CO
1it3 - haHb α+β +CO
1fsx, 1g08, 1g09, 1g0a, 1g0b - bHb α+β +CO
1gcw – MgHb + CO
1f5p – SlHb V + CO
1vre, 1vrf - GdHb IV+ CO – NMR
1hbg, 1hbg – GdHb + CO
1cg8 - RsHb α+β + CO
1spg - Hb α+β + CO - Spot croaker
1ouu - trHb α+β (mutant) + CO
1pbx - ErHb α+β+ CO
3vrf - maHb α+β + CO
4esa - Hb α+β + CO – Eleginops maclovinus
4iro – TbHb α+β + CO – Trematomus bernacchii
Hb α+β + O2
3fs4 - osHb α+β + O2
2r80 - pHb α+β +O2
2rao - Hb α+β + O2 – rabbit
2vyw – Hb+O2 – Fasciola Hepatica
2qmb - tHb α+β +O2 - turkey
3a0g - GpHb α+β + O2
3fh9 - Hb α+β +O2 – Indian flying fox
3bcq - Hb α+β +O2 – Brycon cephalus
2olp - LpHb+O2
3ciu - bHb α+β +O+glycosylation
2dn1, 1lfq, 1lft, 1lfv, 1lfy, 1lfz, 1gzx, 1thb, 1hho – hHb α+β +O2
1yeo, 1yh9, 1yhe, 1yhr, 1yie, 1yih, 1yen, 1yeq, 1yeu, 1yev, 1yg5, 1ygd, 1ygf, 1y8w, 1ydz, 1ye0, 1ye1, 1ye2, 1y7z, 1y83, 1y85, 1y5f, 1y5j, 1y5k, 1y7c, 1y7d, 1y7g, 1gbv - hHb α+β (mutant) + O2
1faw - Hb α+β +O2 – Grayleg goose
1a4f – BgHb α+β +O2
1qpw - pHb α+β +O2 - pig
1v07 – ClMiHb (mutant) + O2
1kr7 – ClMiHb + O2
1ash – Hb + O2 – Pig roundworm
3pt7 - LpHb α+β +O2
Hb α+β + CN
2g3h – DmHb (mutant)+CN
2oif - Hb+CN – barley
1shr, 1si4 - hHb α+β + CN
2hbc, 2hbd, 2hbe, 2hbf - hHb α+β A + isocyanide compound
1nqp - hHb α+β E + CN
1o1i, 1aby - hHb α+β (mutant)+CN
1i3e - hMetHb α+β Bart’s + N3
1s69 – SyHb + CN
1s6a – SyHb + N3
1jl6, 1jf4 – GdHb IV+ CN
1jl7, 1jf3 – GdHb III + CN
1dly – Hb + CN – Chlamydomonas eugametos
1b0b, 1ebt, 3pt8 – LpHb + CN
4vhb – VsHb + SCN
3vhb – VsHb + imidazole
2vhb – VsHb + N3
1ebc – SwMdetHb + CN
1ith – Hb + CN – Urechis caupo
2lhb – slHb V + CN
Hb α+β + NO2
3d7o, 3onz, 3oo4, 3oo5 - hHb α+β+NO2
1buw - hHb α+β+ S-nitroso-nitrosyl
1rqa - hHb α+β (mutant) + NO
1rps, 1rq4 - hHb α+β+NO
Hb + NO
4g51 – TbHb α+β + NO
Dimeric Hb (Globin-1)
2z85, 2aur, 2av3, 1jzk, 1jzm, 4hbi, 6hbi, 2grf, 3uhk, 3uhn, 3uhq, 3uhr, 3uhs, 3uht, 3uhu, 3uhv, 3uhw, 3uhx, 3uhy, 3uhz, 3ui0, 3ugy- AcHb (mutant) - Ark clam
4sdh - AcHb α+β
3g46, 3g4q, 3g4r, 3g4u, 3g4v, 3g4w, 3g4y, 3g52, 3g53, 1sct, 3sdh, 1nxf, 3uhd, 1nw1, 1nwn – AcHb +CO
2r4w, 2r4x, 2r4y, 2r4z, 2z8a, 2grh, 2auo, 2aup, 2auq, 2av0, 1jzl, 1jwn, 5hbi, 7hbi, 1grz, 3ugz, 3uh3, 3uh5, 3uh6, 3uh7, 3uhb, 3uhc, 3uhd, 3uhe, 3uhg, 3uhh, 3uhi – AcHb (mutant) + CO
1hbi - AcHb +O2
3zhw – EcHb - Escherichia coli
Tetrameric Hb (Globin-2)
4hrt – globin-2 α+ Hb β - Inequivalve Ark
Hb complex with protein
3ovu – hHb α + α-Hb-stabilizing protein + iron-regulated surface determinant protein H
3szk, 3s48 - hHb α + iron-regulated surface determinant protein H
4fc3, 4ij2 - hHb α+β + iron-regulated surface determinant protein H
4f4o - pHb α+β + haptoglobin
Flavohemoglobin
4g1v – yFHb - yeast
4g1b – yFHb + econazole
1cqx – CnFhb – Cupriavidus necator
1gvh – EcFhb
3ozu – CnFhb + miconazole
3ozv – CnFhb + econazole
3ozw – CnFhb + ketoconazole
4eh1 – Fhb + FAD – Vibrio cholerae
