Ribosomal protein S16
From Proteopedia
(Difference between revisions)
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[[3bn0]] – RPS16 – ''Aquifex aeolicus''<br /> | [[3bn0]] – RPS16 – ''Aquifex aeolicus''<br /> | ||
[[1emw]] – TtRPS16 – NMR - ''Thermus thermophilus'' | [[1emw]] – TtRPS16 – NMR - ''Thermus thermophilus'' | ||
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| - | ===S16 in small ribosomal subunit=== | ||
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| - | [[2zm6]], [[1n36]], [[1j5e]], [[3oge]], [[3ogy]], [[3ohc]], [[3ohd]], [[3ohy]], [[3oi0]], [[3oi2]], [[3oi4]], [[3oto]] - TtRPS16 in 30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophilus''<br /> | ||
| - | [[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+RNA fragment<br /> | ||
| - | [[3kc4]] – EcRPS16 in 30S ribosomal subunit - ''Escherichia coli''<br /> | ||
| - | [[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]], [[3oaq]], [[3oar]], [[3ofa]], [[3ofb]], [[3ofo]], [[3ofp]], [[3ofx]], [[3ofy]], [[3or9]], [[3ora]] - EcRPS16 in 30S ribosomal subunit+16S RRNA<br /> | ||
| - | [[1i94]], [[1fka]], [[3uxs]], [[3uxt]], [[4dr1]] - TtRPS16 in 30S ribosomal subunit+16S RRNA<br /> | ||
| - | [[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - TtRPS16 in 30S ribosomal subunit+16S RRNA (mutant)<br />[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] – TtRPS16 in 30S ribosomal subunit+16S RRNA + mRNA<br /> | ||
| - | [[1p87]], [[1p6g]] - EcRPS16 in 30S ribosomal subunit+16S RRNA – Cryo-EM<br /> | ||
| - | [[3bbn]] - RPS16 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach | ||
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| - | ===S16 in small + large ribosomal subunit=== | ||
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| - | [[1ml5]] - EcRPS16 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM | ||
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| - | ===S16 in small ribosomal subunit+ chain release factor (RF)=== | ||
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| - | [[3mr8]], [[3ms0]] – TtRPS16 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA <br /> | ||
| - | [[3d5a]], [[3d5c]] - TtRPS16 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3zvo]] – TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3<br /> | ||
| - | [[2b64]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1<br /> | ||
| - | [[2b9m]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2<br /> | ||
| - | [[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - TtRPS16 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3f1e]], [[3f1g]] - TtRPS16 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA<br /> | ||
| - | [[3uoq]] - EcRPS16 + 16S RRNA + mRNA + peptide chain release factor<br /> | ||
| - | [[4kfh]], [[4kfk]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+ RF-2 + mRNA+ P-site tRNA fMet<br /> | ||
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| - | ===S16 in small ribosomal subunit+tRNA+mRNA=== | ||
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| - | [[2hgi]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br /> | ||
| - | [[4l6k]], [[4l6m]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA<br /> | ||
| - | [[2hgp]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br /> | ||
| - | [[3t1h]], [[3t1y]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br /> | ||
| - | [[3tvf]], [[3tvg]], [[3uyd]], [[3uyf]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA<br /> | ||
| - | [[3zn7]], [[3znd]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA<br /> | ||
| - | [[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br /> | ||
| - | [[2i2p]], [[2i2u]] - EcRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br /> | ||
| - | [[2hgr]], [[3v6u]], [[3v6v]], [[4ej9]], [[4eja]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br /> | ||
| - | [[1yl4]] – TtRPS16 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br /> | ||
| - | [[1pns]] - EcRPS16 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br /> | ||
| - | [[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]] – EcRPS16 in 30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM<br /> | ||
| - | [[3j13]] – EcRPS16 in 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM<br /> | ||
| - | [[1xnq]], [[1xnr]] - TtRPS16 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br /> | ||
| - | [[4gkj]], [[4gkk]] - TtRPS16 in 30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met<br /> | ||
| - | [[4jv5]], [[4jya]], [[4k0k]], [[4k0l]] - TtRPS16 in 30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA <br /> | ||
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| - | ===S16 in small ribosomal subunit+A-site tRNA=== | ||
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| - | [[2uxd]], [[2uxc]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br /> | ||
| - | [[1n32]], [[1n33]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br /> | ||
| - | [[1n34]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br /> | ||
| - | [[1xmo]], [[1xmq]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br /> | ||
| - | [[2uxb]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA | ||
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| - | ===S16 in small ribosomal subunit+P-site tRNA=== | ||
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| - | [[3i8g]] - TtRPS16 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3i8h]], [[3i9b]], [[3i9d]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[1ibk]] - TtRPS16 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br /> | ||
| - | [[2wwl]] - EcRPS16 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - ''Escherichia coli''<br /> | ||
| - | [[3i1q]] - EcRPS16 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA<br /> | ||
| - | [[3i1s]], [[3i1z]], [[3i21]] - EcRPS16 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA | ||
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| - | ===S16 in small ribosomal subunit+A-site tRNA+P-site tRNA=== | ||
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| - | [[1ibl]], [[1ibm]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA | ||
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| - | ===S16 in small ribosomal subunit+P-site tRNA+E-site tRNA=== | ||
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| - | [[2ow8]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[2b9o]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br /> | ||
| - | [[2qnh]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
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| - | ===S16 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA=== | ||
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| - | [[2gy9]], [[2gyb]] - EcRPS16 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br /> | ||
| - | [[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - TtRPS16 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br /> | ||
| - | [[4k0p]] - TtRPS16 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA +mRNA +16S RRNA<br /> | ||
| - | [[3e1a]], [[3e1c]] - EcRPS16 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA | ||
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| - | ===S16 in small ribosomal subunit + antibiotics=== | ||
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| - | [[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr2]], [[4dr3]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+antibiotic<br />[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] – TtRPS16 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic<br /> | ||
| - | [[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]] , [[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy]], [[2qp0]], [[2z4k]], [[2z4m]] - EcRPS16 in 30S ribosomal subunit+16S RRNA+antibiotic<br /> | ||
| - | [[3sfs]] – EcRPS16 in 30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic<br /> | ||
| - | [[4gaq]], [[4gas]] – EcRPS16 in 30S ribosomal subunit+16S RRNA+ mRNA + antibiotic<br /> | ||
| - | [[2j00]], [[2j02]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br /> | ||
| - | [[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - TtRPS14 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin<br /> | ||
| - | [[3knj]], [[3knh]], [[3knl]], [[3knn]] - TtRPS16 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotics<br /> | ||
| - | [[3uz3]], [[3uz4]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin<br /> | ||
| - | [[4g5k]], [[4g5m]], [[4g5t]], [[4g5v]] - TtRPS16 in 30S ribosomal subunit+16S RRNA + tRNA fMet + mRNA + antibiotics<br /> | ||
| - | [[3uzl]], [[3uzm]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin | ||
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| - | ===S16 in small ribosomal subunit + ribosome recycling factor=== | ||
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| - | [[2qbd]], [[2qbf]] - EcRPS16 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor<br /> | ||
| - | [[3r8n]], [[3r8o]], [[4gd1]], [[4gd2]] – EcRPS16 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br /> | ||
| - | [[2qbh]], [[2qbj]] - EcRPS16 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br /> | ||
| - | [[2v46]], [[2v48]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet | ||
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| - | ===S16 in small ribosomal subunit + elongation factor (EF)=== | ||
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| - | [[2wri]], [[2wrk]], [[2xsy]], [[2xuy]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br /> | ||
| - | [[2wrn]], [[2wrq]] - TtRPS16 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br /> | ||
| - | [[3fic]] - TtRPS16 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br /> | ||
| - | [[4abr]] - TtRPS16 in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br /> | ||
| - | [[3izv]] – EcRPS16 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU<br /> | ||
| - | [[3j18]] - EcRPS16 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM<br /> | ||
| - | [[3izw]] – EcRPS16 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU<br /> | ||
| - | [[2y0u]], [[2y0w]], [[2y0y]], [[2y12]], [[2y10]], [[2y18]], [[2y14]], [[2y16]] – TtRPS16 in 30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU<br /> | ||
| - | [[2xqd]] – TtRPS16 in 30S ribosomal subunit+THX+E-site tRNA+mRNA +16S RRNA+elongation factor TU-B<br /> | ||
| - | [[3fih]] - EcRPS16 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br /> | ||
| - | [[3huw]], [[3huy]] - TtRPS16 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br /> | ||
| - | [[4b8f]], [[4b8h]] - TtRPS16 in 30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+EF-G<br /> | ||
| - | [[4btc]], [[4kdg]], [[4kdj]] - TtRPS16 in 30S ribosomal subunit+THX+RNA +16S RRNA+EF-G<br /> | ||
| - | [[4juw]] - TtRPS16 in 30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +EF-G<br /> | ||
| - | [[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]] - TtRPS16 in 30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + EF-G<br /> | ||
| - | [[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] - EcRPS16 in 30S ribosomal subunit +16S RRNA + viomycin + EF-G<br /> | ||
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| - | ===S16 in small ribosomal subunit + translation initiation factor=== | ||
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| - | [[1i96]] - TtRPS16 in 30S ribosomal subunit+THX+IF3+16S RRNA<br /> | ||
| - | [[1hr0]] - TtRPS16 in 30S ribosomal subunit+THX+IF+16S RRNA | ||
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| - | ===S16 in small ribosomal subunit + various proteins=== | ||
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| - | [[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - TtRPS16 in 30S ribosomal subunit+toxin RelE+16S RRNA<br /> | ||
| - | [[4dh9]], [[4dhb]] - TtRPS16 in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br /> | ||
| - | [[1voq]], [[1vos]], [[1vov]], [[1vox]], [[1voz]] - EcRPS16 in 30S ribosomal subunit+protein Y+16S RRNA<br /> | ||
| - | [[3j36]] - EcRPS16 in 30S ribosomal subunit+ tetracycline resistance protein +16S RRNA + mRNA + P-tRNA – Cryo-EM<br /> | ||
| - | [[2xfz]], [[2xg1]] - TtRPS16 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA<br /> | ||
| - | [[3jyv]] - RPS16+RPS0+RPS2+RPS3+RPS5+RPS9+RPS11+RPS13+RPS15+RPS14+RPS18+RPS20+RPS22+RPS23+RPS29+18S RRNA+RACK1+S19E+tRNA – Cryo-EM - ''Thermomyces lanuginosus''<br /> | ||
| - | [[3j00]] – EcRPS16 + 16S RRNA + FTSQ + apolipoprotein A-I<br /> | ||
| - | [[2ykr]] – EcRPS16 + 16S RRNA + GMPPNP + GTPase RSGA<br /> | ||
| - | [[4adv]] - EcRPS16 + 16S RRNA + methyltransferase – Cryo EM<br /> | ||
| - | [[4a2i]] – EcRPS16 + 16S RRNA + GTPase RSGA – Cryo EM<br /> | ||
| - | [[3v22]], [[3v24]], [[3v26]], [[3v28]] – TtRPS16 in 30S ribosomal subunit +16S RRNA +THX + modulation factor<br /> | ||
| - | [[3v2c]], [[3v2e]] – TtRPS16 in 30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor<br /> | ||
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| - | ===S16 in small 40S ribosomal subunit + various proteins=== | ||
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| - | [[2zkq]] – RPS16 in 40S ribosomal subunit+RNA fragments+RACK1+18S RRNA<br /> | ||
| - | [[3iz6]] – RPS16 in 40S ribosomal subunit+RACK1 – wheat – Cryo EM<br /> | ||
| - | [[3izb]] - yRPS16 in 40S ribosomal subunit+ RACK1 – yeast - Cryo-EM<br /> | ||
| - | [[3u5c]], [[3u5g]] - yRPS16 in 40S ribosomal subunit+ RACK1 + suppressor protein SMT1<br /> | ||
| - | [[3o2z]], [[3o30]] – yRPS16 in 40S ribosomal subunit+18S RRNA+RACK1<br /> | ||
| - | [[1s1h]] - yRPS16 in 40S ribosomal subunit+18S RRNA+ EF-2 – Cryo-EM <br /> | ||
| - | [[3j38]] - RPS16 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – ''Drosophila melanogaster'' – Cryo-EM<br /> | ||
| - | [[3j3a]] - RPS16 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – human – Cryo-EM<br /> | ||
| - | [[4kzx]] - rRPS16 in 40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br /> | ||
| - | [[4kzy]] - rRPS16 in 40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br /> | ||
| - | [[4kzz]] - rRPS16 in 40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br /> | ||
===S16 in part of small ribosomal subunit=== | ===S16 in part of small ribosomal subunit=== | ||
| - | [[3iy8]] – EcRPS16+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS17+EcRPS18+''Leishmania taretolae'' mRNA | + | [[3iy8]] – EcRPS16+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS17+EcRPS18+''Leishmania taretolae'' mRNA - ''Escherichia coli'' |
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 09:34, 27 April 2014
Ribosomal protein S16 (RPS16) is one of the 22 proteins which belong to the of the bacterial ribosome. It exhibits endonuclease activity. The images at the left and at the right correspond to one representative RPS16, i.e. the crystal structure of Ribosomal protein S16 from Thermus thermophilus (2zm6, chain P).
Contents |
3D Structures of Ribosomal protein S16
Updated on 27-April-2014
S16
3bn0 – RPS16 – Aquifex aeolicus
1emw – TtRPS16 – NMR - Thermus thermophilus
S16 in part of small ribosomal subunit
3iy8 – EcRPS16+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS17+EcRPS18+Leishmania taretolae mRNA - Escherichia coli
