Ribosomal protein S17
From Proteopedia
(Difference between revisions)
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=== S17 === | === S17 === | ||
| - | [[1rip]] – | + | [[1rip]] – GsRPS17 – NMR - ''Geobacillus stearothermophilus''<br /> |
[[1rq6]] – RPS17 - NMR- ''Methanothermobacter''<br /> | [[1rq6]] – RPS17 - NMR- ''Methanothermobacter''<br /> | ||
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| - | === S17 in small ribosomal subunit === | ||
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| - | [[2zm6]], [[1n36]], [[1j5e]], [[3oge]], [[3ogy]], [[3ohc]], [[3ohd]], [[3ohy]], [[3oi0]], [[3oi2]], [[3oi4]], [[3oto]] - TtRPS17 in 30S ribosomal subunit+THX+16S RRNA - ''Thermus thermophilus''<br /> | ||
| - | [[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+RNA fragment<br /> | ||
| - | [[3kc4]] – EcRPS17 in 30S ribosomal subunit – ''Escherichia coli''<br /> | ||
| - | [[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]], [[3ofa]], [[3ofb]], [[3ofx]], [[3ofy]], [[3ofo]], [[3ofp]], [[3or9]], [[3ora]] - EcRPS17 in 30S ribosomal subunit+16S RRNA<br /> | ||
| - | [[1i94]], [[1fka]], [[3uxs]], [[3uxt]], [[4dr1]] - TtRPS17 in 30S ribosomal subunit+16S RRNA<br /> | ||
| - | [[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - TtRPS17 in 30S ribosomal subunit+16S RRNA (mutant)<br />[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] – TtRPS17 in 30S ribosomal subunit+16S RRNA + mRNA<br /> | ||
| - | [[1p87]], [[1p6g]] - EcRPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM<br /> | ||
| - | [[3bbn]] - RPS17 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach<br /> | ||
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| - | === S17 in small + large ribosomal subunit === | ||
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| - | [[1ml5]] - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM<br /> | ||
| - | [[1eg0]] - EcRPS17 in 30S ribosomal subunit+50S ribosomal subunit + tRNA f-Met + +23S RRNA fragments +16S RRNA fragments – Cryo EM | ||
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| - | === S17 in small ribosomal subunit+ chain release factor (RF)=== | ||
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| - | [[3mr8]], [[3ms0]] – TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA <br /> | ||
| - | [[3d5a]], [[3d5c]] - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3zvo]] – TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3<br /> | ||
| - | [[2b64]] - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1<br /> | ||
| - | [[2b9m]] - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2<br /> | ||
| - | [[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3f1e]], [[3f1g]] - TtRPS17 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA<br /> | ||
| - | [[3uoq]] - EcRPS17 + 16S RRNA + mRNA + peptide chain release factor<br /> | ||
| - | [[4kfh]], [[4kfk]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+ RF-2 + mRNA+ P-site tRNA fMet<br /> | ||
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| - | === S17 in small ribosomal subunit+tRNA+mRNA === | ||
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| - | [[2hgi]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br /> | ||
| - | [[4l6k]], [[4l6m]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA<br /> | ||
| - | [[2hgp]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br /> | ||
| - | [[3t1h]], [[3t1y]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br /> | ||
| - | [[3tvf]], [[3tvg]], [[3uyd]], [[3uyf]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA<br /> | ||
| - | [[3zn7]], [[3znd]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA<br /> | ||
| - | [[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br />[[2i2p]], [[2i2u]] - EcRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br /> | ||
| - | [[2hgr]], [[3v6u]], [[3v6v]], [[4ej9]], [[4eja]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br /> | ||
| - | [[1yl4]] – TtRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br /> | ||
| - | [[1pns]] – EcRPS17 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br /> | ||
| - | [[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]], [[3j20]] – EcRPS17 in 30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM<br /> | ||
| - | [[3j13]] – EcRPS17 in 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM<br /> | ||
| - | [[1xnq]], [[1xnr]] - TtRPS17 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br /> | ||
| - | [[4gkj]], [[4gkk]] - TtRPS17 in 30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met<br /> | ||
| - | [[4jv5]], [[4jya]], [[4k0k]], [[4k0l]] - TtRPS17 in 30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA <br /> | ||
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| - | === S17 in small ribosomal subunit+A-site tRNA === | ||
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| - | [[2uxd]], [[2uxc]] - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br /> | ||
| - | [[1n32]], [[1n33]] - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br /> | ||
| - | [[1n34]] - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br /> | ||
| - | [[1xmo]], [[1xmq]] - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br /> | ||
| - | [[2uxb]] - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA<br /> | ||
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| - | === S17 in small ribosomal subunit+P-site tRNA === | ||
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| - | [[3i8g]] - TtRPS17 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3i8h]], [[3i9b]], [[3i9d]] - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[1ibk]] - TtRPS17 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br /> | ||
| - | [[2wwl]] - EcRPS17 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - ''Escherichia coli''<br /> | ||
| - | [[3i1q]] - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA <br /> | ||
| - | [[3i1s]], [[3i1z]], [[3i21]] - EcRPS17 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA<br /> | ||
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| - | === S17 in small ribosomal subunit+A-site tRNA+P-site tRNA === | ||
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| - | [[1ibl]], [[1ibm]] - TtRPS17 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA<br /> | ||
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| - | === S17 in small ribosomal subunit+P-site tRNA+E-site tRNA === | ||
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| - | [[2ow8]] - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[2b9o]] - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br /> | ||
| - | [[2qnh]] - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
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| - | === S17 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA === | ||
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| - | [[2gy9]], [[2gyb]] - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br /> | ||
| - | [[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br /> | ||
| - | [[4k0p]] - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA +mRNA +16S RRNA<br /> | ||
| - | [[3e1a]], [[3e1c]] - EcRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
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| - | === S17 in small ribosomal subunit + antibiotics === | ||
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| - | [[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[4dr2]], [[4dr3]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+antibiotic<br /> | ||
| - | [[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] – TtRPS17 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic<br /> | ||
| - | [[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]] , [[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy]], [[2qp0]], [[2z4k]], [[2z4m]], [[3oaq]], [[3oar]] - EcRPS17 in 30S ribosomal subunit+16S RRNA+antibiotic<br /> | ||
| - | [[3sfs]] – EcRPS17 in 30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic<br /> | ||
| - | [[4gaq]], [[4gas]] – EcRPS17 in 30S ribosomal subunit+16S RRNA+ mRNA + antibiotic<br /> | ||
| - | [[2j00]], [[2j02]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br /> | ||
| - | [[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin<br /> | ||
| - | [[3knj]], [[3knh]], [[3knl]], [[3knn]] - TtRPS17 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotics<br /> | ||
| - | [[3uz3]], [[3uz4]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin<br /> | ||
| - | [[4g5k]], [[4g5m]], [[4g5t]], [[4g5v]] - TtRPS17 in 30S ribosomal subunit+16S RRNA + tRNA fMet + mRNA + antibiotics<br /> | ||
| - | [[3uzl]], [[3uzm]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin | ||
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| - | === S17 in small ribosomal subunit + ribosome recycling factor === | ||
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| - | [[2qbd]], [[2qbf]] – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor<br /> | ||
| - | [[3r8n]], [[3r8o]], [[4gd1]], [[4gd2]] – EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br /> | ||
| - | [[2qbh]], [[2qbj]] - EcRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br /> | ||
| - | [[2v46]], [[2v48]] - TtRPS17 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet<br /> | ||
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| - | === S17 in small ribosomal subunit + elongation factor (EF)=== | ||
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| - | [[2wri]], [[2wrk]] - TtRPS17 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br /> | ||
| - | [[2wrn]], [[2wrq]] - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br /> | ||
| - | [[3fic]] - TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br /> | ||
| - | [[4abr]] - TtRPS17 in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br /> | ||
| - | [[3izv]] – EcRPS17 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU<br /> | ||
| - | [[3j18]] - EcRPS17 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM<br /> | ||
| - | [[3izw]] – EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU<br /> | ||
| - | [[2y0u]], [[2y0w]], [[2y0y]], [[2y12]], [[2y10]], [[2y18]], [[2y14]], [[2y16]] – TtRPS17 in 30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU<br /> | ||
| - | [[3fih]] - EcRPS17 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br /> | ||
| - | [[3huw]], [[3huy]] - TtRPS17 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br /> | ||
| - | [[4b8f]], [[4b8h]] - TtRPS17 in 30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+EF-G<br /> | ||
| - | [[4btc]], [[4kdg]], [[4kdj]] - TtRPS17 in 30S ribosomal subunit+THX+RNA +16S RRNA+EF-G<br /> | ||
| - | [[4juw]] - TtRPS17 in 30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +EF-G<br /> | ||
| - | [[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]] - TtRPS17 in 30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + EF-G<br /> | ||
| - | [[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] - EcRPS17 in 30S ribosomal subunit +16S RRNA + viomycin + EF-G<br /> | ||
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| - | === S17 in small ribosomal subunit + translation initiation factor === | ||
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| - | [[1i96]] - TtRPS17 in 30S ribosomal subunit+THX+IF3+16S RRNA<br /> | ||
| - | [[1hr0]] - TtRPS17 in 30S ribosomal subunit+THX+IF+16S RRNA<br /> | ||
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| - | === S17 in small ribosomal subunit + various proteins === | ||
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| - | [[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - TtRPS17 in 30S ribosomal subunit+toxin RelE+16S RRNA<br /> | ||
| - | [[4dh9]], [[4dhb]] - TtRPS17 in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br /> | ||
| - | [[1voq]], [[1vos]], [[1vov]], [[1vox]], [[1voz]] - EcRPS17 in 30S ribosomal subunit+protein Y+16S RRNA<br /> | ||
| - | [[3j36]] - EcRPS17 in 30S ribosomal subunit+ tetracycline resistance protein +16S RRNA + mRNA + P-tRNA – Cryo-EM<br /> | ||
| - | [[2xfz]], [[2xg1]] - TtRPS17 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA<br /> | ||
| - | [[3j00]] – EcRPS17 + 16S RRNA + FTSQ + apolipoprotein A-I<br /> | ||
| - | [[2ykr]] – EcRPS17 + 16S RRNA + GMPPNP + GTPase RSGA<br /> | ||
| - | [[4adv]] - EcRPS17 + 16S RRNA + methyltransferase – Cryo EM<br /> | ||
| - | [[3v22]], [[3v24]], [[3v26]], [[3v28]] – TtRPS17 in 30S ribosomal subunit +16S RRNA +THX + modulation factor<br /> | ||
| - | [[3v2c]], [[3v2e]] – TtRPS17 in 30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor<br /> | ||
| - | [[4a2i]] – EcRPS17 + 16S RRNA + GTPase RSGA – Cryo EM | ||
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| - | ===S17 in small 40S ribosomal subunit + various proteins=== | ||
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| - | [[2xzm]], [[2xzn]] – RPS17 in 40S ribosomal subunit+18S RRNA+RACK1 – ''Tetrahymena thermophila''<br /> | ||
| - | [[3iz6]] - RPS17 in 40S ribosomal subunit +RACK1+18S RRNA – wheat – Cryo-EM<br /> | ||
| - | [[3izb]] - yRPS17 in 40S ribosomal subunit+ RACK1 – yeast - Cryo-EM<br /> | ||
| - | [[3u5c]], [[3u5g]] - yRPS17 in 40S ribosomal subunit+ RACK1 + suppressor protein SMT1<br /> | ||
| - | [[3o2z]], [[3o30]] - yRPS17 in 40S ribosomal subunit +RACK1<br /> | ||
| - | [[3j38]] - RPS17 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – ''Drosophila melanogaster'' – Cryo-EM<br /> | ||
| - | [[3j3a]] - RPS17 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – human – Cryo-EM<br /> | ||
| - | [[4kzx]] - rRPS17 in 40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br /> | ||
| - | [[4kzy]] - rRPS17 in 40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br /> | ||
| - | [[4kzz]] - rRPS17 in 40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br /> | ||
=== S17 in part of small ribosomal subunit === | === S17 in part of small ribosomal subunit === | ||
| - | [[3iy8]] – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+Leishmania taretolae mRNA<br /> | + | [[3iy8]] – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+''Leishmania taretolae'' mRNA - ''Escherichia coli''<br /> |
| - | [[1qd7]] - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment<br /> | + | [[1qd7]] - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment - ''Thermus thermophilus''<br /> |
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 09:38, 27 April 2014
Ribosomal protein S17 (RPS17) is one of the 22 proteins which belong to the of the bacterial ribosome. It binds to the 5' end of 16S RRNA and may participate in the recognition of termination codons. The images at the left and at the right correspond to one representative RPS17, i.e. the crystal structure of Ribosomal protein S17 from Thermus thermophilus (2zm6, chain Q).
Contents |
3D Structures of Ribosomal protein S17
Updated on 27-April-2014
S17
1rip – GsRPS17 – NMR - Geobacillus stearothermophilus
1rq6 – RPS17 - NMR- Methanothermobacter
S17 in part of small ribosomal subunit
3iy8 – EcRPS17+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS18+Leishmania taretolae mRNA - Escherichia coli
1qd7 - TtRPS17+TtRPS4+TtRPS5+TtRPS7+TtRPS8+TtRPS6+TtRPS15+TtRPS20+16S RRNA fragment - Thermus thermophilus
