143d
From Proteopedia
| Line 1: | Line 1: | ||
| - | [[Image:143d.jpg|left|200px]] | + | [[Image:143d.jpg|left|200px]] |
| - | + | ||
| - | '''SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX''' | + | {{Structure |
| + | |PDB= 143d |SIZE=350|CAPTION= <scene name='initialview01'>143d</scene> | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX''' | ||
| + | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
| - | 143D is a [ | + | 143D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=143D OCA]. |
==Reference== | ==Reference== | ||
| - | Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex., Wang Y, Patel DJ, Structure. 1993 Dec 15;1(4):263-82. PMID:[http:// | + | Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex., Wang Y, Patel DJ, Structure. 1993 Dec 15;1(4):263-82. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8081740 8081740] |
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
[[Category: Patel, D J.]] | [[Category: Patel, D J.]] | ||
| Line 19: | Line 28: | ||
[[Category: nmr]] | [[Category: nmr]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 09:49:30 2008'' |
Revision as of 07:49, 20 March 2008
| |||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX
Overview
BACKGROUND: Repeats of Gn sequences are detected as single strand overhangs at the ends of eukaryotic chromosomes together with associated binding proteins. Such telomere sequences have been implicated in the replication and maintenance of chromosomal termini. They may also mediate chromosomal organization and association during meiosis and mitosis. RESULTS: We have determined the three-dimensional solution structure of the human telomere sequence, d[AG3(T2AG3)3] in Na(+)-containing solution using a combined NMR, distance geometry and molecular dynamics approach (including relaxation matrix refinement). The sequence, which contains four AG3 repeats, folds intramolecularly into a G-tetraplex stabilized by three stacked G-tetrads which are connected by two lateral loops and a central diagonal loop. Of the four grooves that are formed, one is wide, two are of medium width and one is narrow. The alignment of adjacent G-G-G segments in parallel generates the two grooves of medium width whilst the antiparallel arrangement results in one wide and one narrow groove. Three of the four adenines stack on top of adjacent G-tetrads while the majority of the thymines sample multiple conformations. CONCLUSIONS: The availability of the d[AG3(T2AG3)3] solution structure containing four AG3 human telomeric repeats should permit the rational design of ligands that recognize and bind with specificity and affinity to the individual grooves of the G-tetraplex, as well as to either end containing the diagonal and lateral loops. Such ligands could modulate the equilibrium between folded G-tetraplex structures and their unfolded extended counterparts.
About this Structure
143D is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex., Wang Y, Patel DJ, Structure. 1993 Dec 15;1(4):263-82. PMID:8081740
Page seeded by OCA on Thu Mar 20 09:49:30 2008
