2xra

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[[Image:2xra.png|left|200px]]
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==crystal structure of the HK20 Fab in complex with a gp41 mimetic 5- Helix==
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<StructureSection load='2xra' size='340' side='right' caption='[[2xra]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2xra]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XRA OCA]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1df4|1df4]], [[1df5|1df5]], [[1dlb|1dlb]], [[1opn|1opn]], [[1opw|1opw]], [[1gc1|1gc1]], [[1opt|1opt]], [[1k33|1k33]], [[1rzj|1rzj]], [[1g9m|1g9m]], [[1k34|1k34]], [[1aik|1aik]], [[2cmr|2cmr]], [[1gzl|1gzl]], [[1mzi|1mzi]]</td></tr>
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<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xra OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xra RCSB], [http://www.ebi.ac.uk/pdbsum/2xra PDBsum]</span></td></tr>
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<table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The human monoclonal antibody (mAb) HK20 neutralizes a broad spectrum of primary HIV-1 isolates by targeting the highly conserved heptad repeat 1 (HR1) of gp41, which is transiently exposed during HIV-1 entry. Here we present the crystal structure of the HK20 Fab in complex with a gp41 mimetic 5-Helix at 2.3 A resolution. HK20 employs its heavy chain CDR H2 and H3 loops to bind into a conserved hydrophobic HR1 pocket that is occupied by HR2 residues in the gp41 post fusion conformation. Compared to the previously described HR1-specific mAb D5, HK20 approaches its epitope with a different angle which might favor epitope access and thus contribute to its higher neutralization breadth and potency. Comparison of the neutralization activities of HK20 IgG, Fab and scFv employing both single cycle and multiple cycle neutralization assays revealed much higher potencies for the smaller Fab and scFv over IgG, implying that the target site is difficult to access for complete antibodies. Nevertheless, two thirds of sera from HIV-1 infected individuals contain significant titers of HK20-inhibiting antibodies. The breadth of neutralization of primary isolates across all clades, the higher potencies for C-clade viruses and the targeting of a distinct site as compared to the fusion inhibitor T-20 demonstrate the potential of HK20 scFv as a therapeutic tool.
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Crystal Structure and Size-Dependent Neutralization Properties of HK20, a Human Monoclonal Antibody Binding to the Highly Conserved Heptad Repeat 1 of gp41.,Sabin C, Corti D, Buzon V, Seaman MS, Lutje Hulsik D, Hinz A, Vanzetta F, Agatic G, Silacci C, Mainetti L, Scarlatti G, Sallusto F, Weiss R, Lanzavecchia A, Weissenhorn W PLoS Pathog. 2010 Nov 18;6(11):e1001195. PMID:21124990<ref>PMID:21124990</ref>
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The line below this paragraph, containing "STRUCTURE_2xra", creates the "Structure Box" on the page.
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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or leave the SCENE parameter empty for the default display.
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{{STRUCTURE_2xra| PDB=2xra | SCENE= }}
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===crystal structure of the HK20 Fab in complex with a gp41 mimetic 5- Helix===
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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</div>
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_21124990}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 21124990 is the PubMed ID number.
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</StructureSection>
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{{ABSTRACT_PUBMED_21124990}}
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==About this Structure==
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[[2xra]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XRA OCA].
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==Reference==
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<ref group="xtra">PMID:021124990</ref><ref group="xtra">PMID:016862157</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Synthetic construct]]
[[Category: Synthetic construct]]

Revision as of 07:49, 14 May 2014

crystal structure of the HK20 Fab in complex with a gp41 mimetic 5- Helix

2xra, resolution 2.30Å

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