2y3r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:2y3r.png|left|200px]]
+
==STRUCTURE OF THE TIRANDAMYCIN-BOUND FAD-DEPENDENT TIRANDAMYCIN OXIDASE TAML IN P21 SPACE GROUP==
 +
<StructureSection load='2y3r' size='340' side='right' caption='[[2y3r]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2y3r]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_sp._307-9 Streptomyces sp. 307-9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y3R OCA]. <br>
 +
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TIR:TIRANDAMYCIN+E'>TIR</scene>, <scene name='pdbligand=TRK:TIRANDAMYCIN+D'>TRK</scene><br>
 +
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2y4g|2y4g]], [[2y08|2y08]], [[2y3s|2y3s]]</td></tr>
 +
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
 +
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2y3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y3r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2y3r RCSB], [http://www.ebi.ac.uk/pdbsum/2y3r PDBsum]</span></td></tr>
 +
<table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Elucidation of natural product biosynthetic pathways provides important insights into the assembly of potent bioactive molecules, and expands access to unique enzymes able to selectively modify complex substrates. Here, we show full reconstitution, in vitro, of an unusual multi-step oxidative cascade for post-assembly-line tailoring of tirandamycin antibiotics. This pathway involves a remarkably versatile and iterative cytochrome P450 monooxygenase (TamI) and a flavin adenine dinucleotide-dependent oxidase (TamL), which act co-dependently through the repeated exchange of substrates. TamI hydroxylates tirandamycin C (TirC) to generate tirandamycin E (TirE), a previously unidentified tirandamycin intermediate. TirE is subsequently oxidized by TamL, giving rise to the ketone of tirandamycin D (TirD), after which a unique exchange back to TamI enables successive epoxidation and hydroxylation to afford, respectively, the final products tirandamycin A (TirA) and tirandamycin B (TirB). Ligand-free, substrate- and product-bound crystal structures of bicovalently flavinylated TamL oxidase reveal a likely mechanism for the C10 oxidation of TirE.
-
<!--
+
Tirandamycin biosynthesis is mediated by co-dependent oxidative enzymes.,Carlson JC, Li S, Gunatilleke SS, Anzai Y, Burr DA, Podust LM, Sherman DH Nat Chem. 2011 Jul 17;3(8):628-33. doi: 10.1038/nchem.1087. PMID:21778983<ref>PMID:21778983</ref>
-
The line below this paragraph, containing "STRUCTURE_2y3r", creates the "Structure Box" on the page.
+
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
-
or leave the SCENE parameter empty for the default display.
+
-
-->
+
-
{{STRUCTURE_2y3r| PDB=2y3r | SCENE= }}
+
-
===STRUCTURE OF THE TIRANDAMYCIN-BOUND FAD-DEPENDENT TIRANDAMYCIN OXIDASE TAML IN P21 SPACE GROUP===
+
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_21778983}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 21778983 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Streptomyces sp. 307-9]]
-
{{ABSTRACT_PUBMED_21778983}}
+
-
 
+
-
==About this Structure==
+
-
[[2y3r]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y3R OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:021778983</ref><references group="xtra"/>
+
-
[[Category: Bacteria]]
+
[[Category: Anzai, Y.]]
[[Category: Anzai, Y.]]
[[Category: Burr, D A.]]
[[Category: Burr, D A.]]

Revision as of 07:51, 14 May 2014

STRUCTURE OF THE TIRANDAMYCIN-BOUND FAD-DEPENDENT TIRANDAMYCIN OXIDASE TAML IN P21 SPACE GROUP

2y3r, resolution 1.79Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Views
Personal tools
Navigation
Toolbox