Sandbox Reserved 932
From Proteopedia
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There are 10 structurally important cysteine-residues in denmotoxin which form five stabilizing <scene name='57/579702/Disulphides/3'>disulphide bonds</scene>. Four of these disulphide bonds are located at the central core ( <scene name='57/579702/3ftx_beta_strands/2'>Three beta-strands froming the central core</scene> ) and the fifth at the tip of the first loop. The cysteine residues of all 3FTXs are highly conserved, whereas the other residues within the sequence express high variability. Denmotoxins consists of <scene name='57/579702/Three_fingers/1'>three polypeptide loops</scene> protruding from the globular core; this structure is typical for 3FTXs. The globular core consists of a triple stranded anti-parallel β-sheet; two of the β-strands in this structure connect to the second loop (central loop) and one β-strand connects to the third loop. There are two highly <scene name='57/579702/Flexible_regions/2'>Flexible regions</scene> on the protein: one at the tip of the central loop and one at the 3 first residues of the N-terminus; the expected active site of denmotoxin is at the tip of the central loop. | There are 10 structurally important cysteine-residues in denmotoxin which form five stabilizing <scene name='57/579702/Disulphides/3'>disulphide bonds</scene>. Four of these disulphide bonds are located at the central core ( <scene name='57/579702/3ftx_beta_strands/2'>Three beta-strands froming the central core</scene> ) and the fifth at the tip of the first loop. The cysteine residues of all 3FTXs are highly conserved, whereas the other residues within the sequence express high variability. Denmotoxins consists of <scene name='57/579702/Three_fingers/1'>three polypeptide loops</scene> protruding from the globular core; this structure is typical for 3FTXs. The globular core consists of a triple stranded anti-parallel β-sheet; two of the β-strands in this structure connect to the second loop (central loop) and one β-strand connects to the third loop. There are two highly <scene name='57/579702/Flexible_regions/2'>Flexible regions</scene> on the protein: one at the tip of the central loop and one at the 3 first residues of the N-terminus; the expected active site of denmotoxin is at the tip of the central loop. | ||
| - | Denmotoxin shares approximately 30% sequence similarity with other 3FTXs | + | Denmotoxin shares approximately 30% sequence similarity with other 3FTXs with an exception of exhibiting approximately 50% sequence similarity with another colubrid snake venom α-colubritoxin. Despite the relatively low sequence similarity, denmotoxin possesses all the residues needed to maintain the 3 finger fold. A large part of the sequence similarity between denmotoxin and other 3FTXs is due to the highly conserved disulphides and a number of structurally important residues. |
Revision as of 11:57, 15 May 2014
| This Sandbox is Reserved from 01/04/2014, through 30/06/2014 for use in the course "510042. Protein structure, function and folding" taught by Prof Adrian Goldman, Tommi Kajander, Taru Meri, Konstantin Kogan and Juho Kellosalo at the University of Helsinki. This reservation includes Sandbox Reserved 923 through Sandbox Reserved 947. |
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B. Dendrophila monomeric toxin (Denmotoxin) is the primary protein of snake venom used by Boiga dendrophila. This colubrid snake lives in Southest Asian lowland rainforest and mangrove swamps using birds as its primary prey.
One of the most well characterized snake venom protein families is the Three-finger-toxins (3FTX). These proteins have three β-stranded finger-like loops, stabilized by four disulphide bridges on the surface of a globular core. In non-convential 3TFXs a fifth disulphide bridge can be present as is the case in Denmotoxin.
How the overall structure looks like? Subunits orientation, chains: the number and relative positions, etc.
Denmotoxin
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