1a2e
From Proteopedia
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| - | [[Image:1a2e.gif|left|200px]] | + | [[Image:1a2e.gif|left|200px]] |
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| - | '''CRYSTAL STRUCTURE OF A DOUBLE-STRANDED DNA DECAMER CONTAINING A CISPLATIN INTERSTRAND CROSS-LINK ADDUCT''' | + | {{Structure |
| + | |PDB= 1a2e |SIZE=350|CAPTION= <scene name='initialview01'>1a2e</scene>, resolution 1.63Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=CPT:CIS-PLATINUM-(NH3)2'>CPT</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''CRYSTAL STRUCTURE OF A DOUBLE-STRANDED DNA DECAMER CONTAINING A CISPLATIN INTERSTRAND CROSS-LINK ADDUCT''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1A2E is a [ | + | 1A2E is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A2E OCA]. |
==Reference== | ==Reference== | ||
| - | Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 A resolution: hydration at the platinated site., Coste F, Malinge JM, Serre L, Shepard W, Roth M, Leng M, Zelwer C, Nucleic Acids Res. 1999 Apr 15;27(8):1837-46. PMID:[http:// | + | Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 A resolution: hydration at the platinated site., Coste F, Malinge JM, Serre L, Shepard W, Roth M, Leng M, Zelwer C, Nucleic Acids Res. 1999 Apr 15;27(8):1837-46. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10101191 10101191] |
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
[[Category: Coste, F.]] | [[Category: Coste, F.]] | ||
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[[Category: interstrand cross-link]] | [[Category: interstrand cross-link]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 09:51:52 2008'' |
Revision as of 07:51, 20 March 2008
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| , resolution 1.63Å | |||||||
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| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF A DOUBLE-STRANDED DNA DECAMER CONTAINING A CISPLATIN INTERSTRAND CROSS-LINK ADDUCT
Overview
cis-diamminedichloroplatinum (II) (cisplatin) is a powerful anti-tumor drug whose target is cellular DNA. In the reaction between DNA and cisplatin, covalent intrastrand and interstrand cross-links (ICL) are formed. Two solution structures of the ICL have been published recently. In both models the double-helix is bent and unwound but with significantly different angle values. We solved the crystal structure at 100K of a double-stranded DNA decamer containing a single cisplatin ICL, using the anomalous scattering (MAD) of platinum as a unique source of phase information. We found 47 degrees for double-helix bending and 70 degrees for unwinding in agreement with previous electrophoretic assays. The crystals are stabilized by intermolecular contacts involving two cytosines extruded from the double-helix, one of which makes a triplet with a terminal G.C pair. The platinum coordination is nearly square and the platinum residue is embedded into a cage of nine water molecules linked to the cross-linked guanines, to the two amine groups, and to the phosphodiester backbone through other water molecules. This water molecule organization is discussed in relation with the chemical stability of the ICL.
About this Structure
1A2E is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 A resolution: hydration at the platinated site., Coste F, Malinge JM, Serre L, Shepard W, Roth M, Leng M, Zelwer C, Nucleic Acids Res. 1999 Apr 15;27(8):1837-46. PMID:10101191
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