1a2z
From Proteopedia
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| - | [[Image:1a2z.gif|left|200px]] | + | [[Image:1a2z.gif|left|200px]] |
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| - | '''PYRROLIDONE CARBOXYL PEPTIDASE FROM THERMOCOCCUS LITORALIS''' | + | {{Structure |
| + | |PDB= 1a2z |SIZE=350|CAPTION= <scene name='initialview01'>1a2z</scene>, resolution 1.73Å | ||
| + | |SITE= <scene name='pdbsite=AVE:Catalytic+Triad'>AVE</scene> | ||
| + | |LIGAND= <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] | ||
| + | |GENE= PCP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2265 Thermococcus litoralis]) | ||
| + | }} | ||
| + | |||
| + | '''PYRROLIDONE CARBOXYL PEPTIDASE FROM THERMOCOCCUS LITORALIS''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1A2Z is a [ | + | 1A2Z is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermococcus_litoralis Thermococcus litoralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A2Z OCA]. |
==Reference== | ==Reference== | ||
| - | X-ray structure of pyrrolidone carboxyl peptidase from the hyperthermophilic archaeon Thermococcus litoralis., Singleton M, Isupov M, Littlechild J, Structure. 1999 Mar 15;7(3):237-44. PMID:[http:// | + | X-ray structure of pyrrolidone carboxyl peptidase from the hyperthermophilic archaeon Thermococcus litoralis., Singleton M, Isupov M, Littlechild J, Structure. 1999 Mar 15;7(3):237-44. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10368293 10368293] |
[[Category: Pyroglutamyl-peptidase I]] | [[Category: Pyroglutamyl-peptidase I]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: peptidase]] | [[Category: peptidase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 09:52:07 2008'' |
Revision as of 07:52, 20 March 2008
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| , resolution 1.73Å | |||||||
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| Sites: | |||||||
| Ligands: | |||||||
| Gene: | PCP (Thermococcus litoralis) | ||||||
| Activity: | Pyroglutamyl-peptidase I, with EC number 3.4.19.3 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
PYRROLIDONE CARBOXYL PEPTIDASE FROM THERMOCOCCUS LITORALIS
Overview
BACKGROUND: Pyrrolidone carboxyl peptidases (pcps) are a group of exopeptidases responsible for the hydrolysis of N-terminal pyroglutamate residues from peptides and proteins. The bacterial and archaeal pcps are members of a conserved family of cysteine proteases. The pcp from the hyperthermophilic archaeon Thermococcus litoralis is more thermostable than the bacterial enzymes with which it has up to 40% sequence identity. The pcp activity in archaea and eubacteria is proposed to be involved in detoxification processes and in nutrient metabolism; eukaryotic counterparts of the enzyme are involved in the processing of biologically active peptides. RESULTS: The crystal structure of pcp has been determined by multiple isomorphous replacement techniques at 1.73 A resolution and refined to an R factor of 18.7% (Rfree = 21.4%). The enzyme is a homotetramer of single open alpha/beta domain subunits, with a prominent hydrophobic core formed from loops coming together from each monomer. The active-site residues have been identified as a Cys143-His167-Glu80 catalytic triad. Structural homology to enzymes of different specificity and mechanism has been identified. CONCLUSIONS: The Thermococcus pcp has no sequence or structural homology with other members of the cysteine protease family. It does, however, show considerable similarities to other hydrolytic enzymes of widely varying substrate specificity and mechanism, suggesting that they are the products of divergent evolution from a common ancestor. The enhanced thermostability of the T. litoralis pcp may arise from hydrophobic interactions between the subunits and the presence of intersubunit disulphide bridges.
About this Structure
1A2Z is a Single protein structure of sequence from Thermococcus litoralis. Full crystallographic information is available from OCA.
Reference
X-ray structure of pyrrolidone carboxyl peptidase from the hyperthermophilic archaeon Thermococcus litoralis., Singleton M, Isupov M, Littlechild J, Structure. 1999 Mar 15;7(3):237-44. PMID:10368293
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