3oum

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[[Image:3oum.jpg|left|200px]]
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==Crystal Structure of toxoflavin-degrading enzyme in complex with toxoflavin==
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<StructureSection load='3oum' size='340' side='right' caption='[[3oum]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3oum]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Paenibacillus_polymyxa Paenibacillus polymyxa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OUM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OUM FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TOF:1,6-DIMETHYLPYRIMIDO[5,4-E][1,2,4]TRIAZINE-5,7(1H,6H)-DIONE'>TOF</scene><br>
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<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3oul|3oul]]</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oum FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oum OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3oum RCSB], [http://www.ebi.ac.uk/pdbsum/3oum PDBsum]</span></td></tr>
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<table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Pathogenic bacteria synthesize and secrete toxic low molecular weight compounds as virulence factors. These microbial toxins play essential roles in the pathogenicity of bacteria in various hosts, and are emerging as targets for antivirulence strategies. Toxoflavin, a phytotoxin produced by Burkholderia glumae BGR1, has been known to be the key factor in rice grain rot and wilt in many field crops. Recently, toxoflavin-degrading enzyme (TxDE) was identified from Paenibacillus polymyxa JH2, thereby providing a possible antivirulence strategy for toxoflavin-mediated plant diseases. Here, we report the crystal structure of TxDE in the substrate-free form and in complex with toxoflavin, along with the results of a functional analysis. The overall structure of TxDE is similar to those of the vicinal oxygen chelate superfamily of metalloenzymes, despite the lack of apparent sequence identity. The active site is located at the end of the hydrophobic channel, 9 A in length, and contains a Mn(II) ion interacting with one histidine residue, two glutamate residues, and three water molecules in an octahedral coordination. In the complex, toxoflavin binds in the hydrophobic active site, specifically the Mn(II)-coordination shell by replacing a ligating water molecule. A functional analysis indicated that TxDE catalyzes the degradation of toxoflavin in a manner dependent on oxygen, Mn(II), and the reducing agent dithiothreitol. These results provide the structural features of TxDE and the early events in catalysis.
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Structural and functional analysis of phytotoxin toxoflavin-degrading enzyme.,Jung WS, Lee J, Kim MI, Ma J, Nagamatsu T, Goo E, Kim H, Hwang I, Han J, Rhee S PLoS One. 2011;6(7):e22443. Epub 2011 Jul 25. PMID:21799856<ref>PMID:21799856</ref>
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The line below this paragraph, containing "STRUCTURE_3oum", creates the "Structure Box" on the page.
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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or leave the SCENE parameter empty for the default display.
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{{STRUCTURE_3oum| PDB=3oum | SCENE= }}
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===Crystal Structure of toxoflavin-degrading enzyme in complex with toxoflavin===
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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</div>
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_21799856}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 21799856 is the PubMed ID number.
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</StructureSection>
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{{ABSTRACT_PUBMED_21799856}}
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==About this Structure==
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[[3oum]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Paenibacillus_polymyxa Paenibacillus polymyxa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OUM OCA].
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==Reference==
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<ref group="xtra">PMID:021799856</ref><references group="xtra"/>
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[[Category: Paenibacillus polymyxa]]
[[Category: Paenibacillus polymyxa]]
[[Category: Kim, M I.]]
[[Category: Kim, M I.]]

Revision as of 10:34, 28 May 2014

Crystal Structure of toxoflavin-degrading enzyme in complex with toxoflavin

3oum, resolution 2.00Å

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