3mei

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[[Image:3mei.png|left|200px]]
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==Regulatory motif from the thymidylate synthase mRNA==
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<StructureSection load='3mei' size='340' side='right' caption='[[3mei]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3mei]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MEI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MEI FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
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<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5BU:5-BROMO-URIDINE-5-MONOPHOSPHATE'>5BU</scene></td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mei FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mei OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3mei RCSB], [http://www.ebi.ac.uk/pdbsum/3mei PDBsum]</span></td></tr>
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<table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A sequence around the start codon of the mRNA of human thymidylate synthase (TS) folds into a secondary-structure motif in which the initiation site is sequestered in a metastable hairpin. Binding of the protein to its own mRNA at the hairpin prevents the production of TS through a translation-repression feedback mechanism. Stabilization of the mRNA hairpin by other ligands has been proposed as a strategy to reduce TS levels in anticancer therapy. Rapidly proliferating cells require high TS activity to maintain the production of thymidine as a building block for DNA synthesis. The crystal structure of a model oligonucleotide (TS1) that represents the TS-binding site of the mRNA has been determined. While fluorescence studies showed that the TS1 RNA preferentially adopts a hairpin structure in solution, even at high RNA concentrations, an asymmetric dimer of two hybridized TS1 strands was obtained in the crystal. The TS1 dimer contains an unusual S-turn motif that also occurs in the `off' state of the human ribosomal decoding site RNA.
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Structure of an RNA dimer of a regulatory element from human thymidylate synthase mRNA.,Dibrov S, McLean J, Hermann T Acta Crystallogr D Biol Crystallogr. 2011 Feb;67(Pt 2):97-104. Epub 2011, Jan 8. PMID:21245530<ref>PMID:21245530</ref>
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The line below this paragraph, containing "STRUCTURE_3mei", creates the "Structure Box" on the page.
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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or leave the SCENE parameter empty for the default display.
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{{STRUCTURE_3mei| PDB=3mei | SCENE= }}
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===Regulatory motif from the thymidylate synthase mRNA===
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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</div>
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_21245530}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 21245530 is the PubMed ID number.
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</StructureSection>
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{{ABSTRACT_PUBMED_21245530}}
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==About this Structure==
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[[3mei]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MEI OCA].
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==Reference==
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<ref group="xtra">PMID:021245530</ref><references group="xtra"/>
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[[Category: Dibrov, S.]]
[[Category: Dibrov, S.]]
[[Category: Hermann, T.]]
[[Category: Hermann, T.]]

Revision as of 10:34, 28 May 2014

Regulatory motif from the thymidylate synthase mRNA

3mei, resolution 1.97Å

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