1amu
From Proteopedia
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| - | [[Image:1amu.gif|left|200px]] | + | [[Image:1amu.gif|left|200px]] |
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| - | '''PHENYLALANINE ACTIVATING DOMAIN OF GRAMICIDIN SYNTHETASE 1 IN A COMPLEX WITH AMP AND PHENYLALANINE''' | + | {{Structure |
| + | |PDB= 1amu |SIZE=350|CAPTION= <scene name='initialview01'>1amu</scene>, resolution 1.9Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene> and <scene name='pdbligand=AMP:ADENOSINE MONOPHOSPHATE'>AMP</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Phenylalanine_racemase_(ATP-hydrolyzing) Phenylalanine racemase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.11 5.1.1.11] | ||
| + | |GENE= GRSA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1393 Brevibacillus brevis]) | ||
| + | }} | ||
| + | |||
| + | '''PHENYLALANINE ACTIVATING DOMAIN OF GRAMICIDIN SYNTHETASE 1 IN A COMPLEX WITH AMP AND PHENYLALANINE''' | ||
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==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1AMU is a [ | + | 1AMU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AMU OCA]. |
==Reference== | ==Reference== | ||
| - | Structural basis for the activation of phenylalanine in the non-ribosomal biosynthesis of gramicidin S., Conti E, Stachelhaus T, Marahiel MA, Brick P, EMBO J. 1997 Jul 16;16(14):4174-83. PMID:[http:// | + | Structural basis for the activation of phenylalanine in the non-ribosomal biosynthesis of gramicidin S., Conti E, Stachelhaus T, Marahiel MA, Brick P, EMBO J. 1997 Jul 16;16(14):4174-83. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9250661 9250661] |
[[Category: Brevibacillus brevis]] | [[Category: Brevibacillus brevis]] | ||
[[Category: Phenylalanine racemase (ATP-hydrolyzing)]] | [[Category: Phenylalanine racemase (ATP-hydrolyzing)]] | ||
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[[Category: peptide synthetase]] | [[Category: peptide synthetase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 09:59:41 2008'' |
Revision as of 07:59, 20 March 2008
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| , resolution 1.9Å | |||||||
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| Ligands: | , , and | ||||||
| Gene: | GRSA (Brevibacillus brevis) | ||||||
| Activity: | Phenylalanine racemase (ATP-hydrolyzing), with EC number 5.1.1.11 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
PHENYLALANINE ACTIVATING DOMAIN OF GRAMICIDIN SYNTHETASE 1 IN A COMPLEX WITH AMP AND PHENYLALANINE
Overview
The non-ribosomal synthesis of the cyclic peptide antibiotic gramicidin S is accomplished by two large multifunctional enzymes, the peptide synthetases 1 and 2. The enzyme complex contains five conserved subunits of approximately 60 kDa which carry out ATP-dependent activation of specific amino acids and share extensive regions of sequence similarity with adenylating enzymes such as firefly luciferases and acyl-CoA ligases. We have determined the crystal structure of the N-terminal adenylation subunit in a complex with AMP and L-phenylalanine to 1.9 A resolution. The 556 amino acid residue fragment is folded into two domains with the active site situated at their interface. Each domain of the enzyme has a similar topology to the corresponding domain of unliganded firefly luciferase, but a remarkable relative domain rotation of 94 degrees occurs. This conformation places the absolutely conserved Lys517 in a position to form electrostatic interactions with both ligands. The AMP is bound with the phosphate moiety interacting with Lys517 and the hydroxyl groups of the ribose forming hydrogen bonds with Asp413. The phenylalanine substrate binds in a hydrophobic pocket with the carboxylate group interacting with Lys517 and the alpha-amino group with Asp235. The structure reveals the role of the invariant residues within the superfamily of adenylate-forming enzymes and indicates a conserved mechanism of nucleotide binding and substrate activation.
About this Structure
1AMU is a Single protein structure of sequence from Brevibacillus brevis. Full crystallographic information is available from OCA.
Reference
Structural basis for the activation of phenylalanine in the non-ribosomal biosynthesis of gramicidin S., Conti E, Stachelhaus T, Marahiel MA, Brick P, EMBO J. 1997 Jul 16;16(14):4174-83. PMID:9250661
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