1ao0
From Proteopedia
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| - | [[Image:1ao0.jpg|left|200px]] | + | [[Image:1ao0.jpg|left|200px]] |
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| - | '''GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE FROM B. SUBTILIS COMPLEXED WITH ADP AND GMP''' | + | {{Structure |
| + | |PDB= 1ao0 |SIZE=350|CAPTION= <scene name='initialview01'>1ao0</scene>, resolution 2.8Å | ||
| + | |SITE= <scene name='pdbsite=AMA:Allosteric+Nucleotide+Binding+Site+At+Interface+Of+A+And+...'>AMA</scene>, <scene name='pdbsite=AMB:Allosteric+Nucleotide+Binding+Site+At+Interface+Of+A+And+...'>AMB</scene>, <scene name='pdbsite=AMC:Allosteric+Nucleotide+Binding+Site+At+Interface+Of+C+And+...'>AMC</scene>, <scene name='pdbsite=AMD:Allosteric+Nucleotide+Binding+Site+At+Interface+Of+C+And+...'>AMD</scene>, <scene name='pdbsite=MGA:Mg2++Ion+Binding+Site.+The+Mg2++Ion+Is+Octahedrally+Coor+...'>MGA</scene>, <scene name='pdbsite=MGB:Mg2++Ion+Binding+Site.+The+Mg2++Ion+Is+Octahedrally+Coor+...'>MGB</scene>, <scene name='pdbsite=MGC:Mg2++Ion+Binding+Site.+The+Mg2++Ion+Is+Octahedrally+Coor+...'>MGC</scene>, <scene name='pdbsite=MGD:Mg2++Ion+Binding+Site.+The+Mg2++Ion+Is+Octahedrally+Coor+...'>MGD</scene>, <scene name='pdbsite=NTA:Ntn+Type+GLN+Amidotransferase+Catalytic+Residue.+This+Si+...'>NTA</scene>, <scene name='pdbsite=NTB:Ntn+Type+GLN+Amidotransferase+Catalytic+Residue.+This+Si+...'>NTB</scene>, <scene name='pdbsite=NTC:Ntn+Type+GLN+Amidotransferase+Catalytic+Residue.+This+Si+...'>NTC</scene>, <scene name='pdbsite=NTD:Ntn+Type+GLN+Amidotransferase+Catalytic+Residue.+This+Si+...'>NTD</scene>, <scene name='pdbsite=PRA:Dual+Site+Binding+Site+For+Substrate+Prpp+In+This+And+Ot+...'>PRA</scene>, <scene name='pdbsite=PRB:Dual+Site+Binding+Site+For+Substrate+Prpp+In+This+And+Ot+...'>PRB</scene>, <scene name='pdbsite=PRC:Dual+Site+Binding+Site+For+Substrate+Prpp+In+This+And+Ot+...'>PRC</scene> and <scene name='pdbsite=PRD:Dual+Site+Binding+Site+For+Substrate+Prpp+In+This+And+Ot+...'>PRD</scene> | ||
| + | |LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=5GP:GUANOSINE-5'-MONOPHOSPHATE'>5GP</scene> and <scene name='pdbligand=ADP:ADENOSINE-5'-DIPHOSPHATE'>ADP</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Amidophosphoribosyltransferase Amidophosphoribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.14 2.4.2.14] | ||
| + | |GENE= PURF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis]) | ||
| + | }} | ||
| + | |||
| + | '''GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE FROM B. SUBTILIS COMPLEXED WITH ADP AND GMP''' | ||
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==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1AO0 is a [ | + | 1AO0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AO0 OCA]. |
==Reference== | ==Reference== | ||
| - | Mechanism of the synergistic end-product regulation of Bacillus subtilis glutamine phosphoribosylpyrophosphate amidotransferase by nucleotides., Chen S, Tomchick DR, Wolle D, Hu P, Smith JL, Switzer RL, Zalkin H, Biochemistry. 1997 Sep 2;36(35):10718-26. PMID:[http:// | + | Mechanism of the synergistic end-product regulation of Bacillus subtilis glutamine phosphoribosylpyrophosphate amidotransferase by nucleotides., Chen S, Tomchick DR, Wolle D, Hu P, Smith JL, Switzer RL, Zalkin H, Biochemistry. 1997 Sep 2;36(35):10718-26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9271502 9271502] |
[[Category: Amidophosphoribosyltransferase]] | [[Category: Amidophosphoribosyltransferase]] | ||
[[Category: Bacillus subtilis]] | [[Category: Bacillus subtilis]] | ||
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[[Category: transferase]] | [[Category: transferase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:00:06 2008'' |
Revision as of 08:00, 20 March 2008
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| , resolution 2.8Å | |||||||
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| Sites: | , , , , , , , , , , , , , , and | ||||||
| Ligands: | , , and | ||||||
| Gene: | PURF (Bacillus subtilis) | ||||||
| Activity: | Amidophosphoribosyltransferase, with EC number 2.4.2.14 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE FROM B. SUBTILIS COMPLEXED WITH ADP AND GMP
Overview
De novo purine nucleotide synthesis is regulated, at least in part, by end-product inhibition of glutamine PRPP amidotransferase. An important feature of this inhibition is the fact that certain synergistic nucleotide pairs give more than additive inhibition. The physiological importance of synergism is in amplifying regulation by the adenine and guanine nucleotide end products of de novo synthesis. Using a new method to quantitate synergism, ADP plus GMP were confirmed [Meyer, E., and Switzer, R. L. (1978) J. Biol. Chem. 254, 5397-5402] to give strong synergistic inhibition of Bacillus subtilis glutamine PRPP amidotransferase. An X-ray structure of the ternary enzyme.ADP.GMP complex established that ADP binds to the allosteric A site and GMP to the catalytic C site. GMP increased the binding affinity of ADP for the A site by approximately 20-fold. Synergism results from a specific nucleotide-nucleotide interaction that is dependent upon a nucleoside diphosphate in the A site and a nucleoside monophosphate in the C site. Furthermore, synergism is enhanced by the competition between nucleotide inhibitor and PRPP substrate for the C site. Purine base specificity results from a backbone carbonyl interaction of Lys305' with the 6-NH2 group of adenine in the A site and a Ser347 Ogamma interaction with the 2-NH2 group of guanine in the C site. Steric considerations favor binding of the nucleoside diphosphate to the A site. Site-directed replacements of key residues increased the nucleotide concentrations needed for 50% inhibition and in some cases perturbed synergism. Mutations in either of the nucleotide sites perturbed function at both sites, supporting the important role of synergism.
About this Structure
1AO0 is a Single protein structure of sequence from Bacillus subtilis. Full crystallographic information is available from OCA.
Reference
Mechanism of the synergistic end-product regulation of Bacillus subtilis glutamine phosphoribosylpyrophosphate amidotransferase by nucleotides., Chen S, Tomchick DR, Wolle D, Hu P, Smith JL, Switzer RL, Zalkin H, Biochemistry. 1997 Sep 2;36(35):10718-26. PMID:9271502
Page seeded by OCA on Thu Mar 20 10:00:06 2008
