3pee

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[[Image:3pee.png|left|200px]]
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==Structure of the C. difficile TcdB cysteine protease domain==
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<StructureSection load='3pee' size='340' side='right' caption='[[3pee]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3pee]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_difficile Clostridium difficile]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PEE FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=IHP:INOSITOL+HEXAKISPHOSPHATE'>IHP</scene><br>
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<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CD0660, tcdB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1496 Clostridium difficile])</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pee OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3pee RCSB], [http://www.ebi.ac.uk/pdbsum/3pee PDBsum]</span></td></tr>
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<table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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An internal cysteine protease domain (CPD) autoproteolytically regulates Clostridium difficile glucosylating toxins by releasing a cytotoxic effector domain into target cells. CPD activity is itself allosterically regulated by the eukaryote-specific molecule inositol hexakisphosphate (InsP(6)). Although allostery controls the function of most proteins, the molecular details underlying this regulatory mechanism are often difficult to characterize. Here we use chemical probes to show that apo-CPD is in dynamic equilibrium between active and inactive states. InsP(6) markedly shifts this equilibrium toward an active conformer that is further restrained upon binding a suicide substrate. Structural analyses combined with systematic mutational and disulfide bond engineering studies show that residues within a beta-hairpin region functionally couple the InsP(6)-binding site to the active site. Collectively, our results identify an allosteric circuit that allows bacterial virulence factors to sense and respond to the eukaryotic environment.
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Defining an allosteric circuit in the cysteine protease domain of Clostridium difficile toxins.,Shen A, Lupardus PJ, Gersch MM, Puri AW, Albrow VE, Garcia KC, Bogyo M Nat Struct Mol Biol. 2011 Mar;18(3):364-71. Epub 2011 Feb 13. PMID:21317893<ref>PMID:21317893</ref>
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The line below this paragraph, containing "STRUCTURE_3pee", creates the "Structure Box" on the page.
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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or leave the SCENE parameter empty for the default display.
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{{STRUCTURE_3pee| PDB=3pee | SCENE= }}
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===Structure of the C. difficile TcdB cysteine protease domain===
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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</div>
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_21317893}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 21317893 is the PubMed ID number.
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</StructureSection>
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{{ABSTRACT_PUBMED_21317893}}
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==About this Structure==
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[[3pee]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_difficile Clostridium difficile]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PEE OCA].
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==Reference==
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<ref group="xtra">PMID:021317893</ref><references group="xtra"/>
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[[Category: Clostridium difficile]]
[[Category: Clostridium difficile]]
[[Category: Garcia, K C.]]
[[Category: Garcia, K C.]]

Revision as of 05:26, 4 June 2014

Structure of the C. difficile TcdB cysteine protease domain

3pee, resolution 2.10Å

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