3t4b

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[[Image:3t4b.png|left|200px]]
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==Crystal Structure of the HCV IRES pseudoknot domain==
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<StructureSection load='3t4b' size='340' side='right' caption='[[3t4b]], [[Resolution|resolution]] 3.55&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3t4b]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3T4B FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene><br>
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<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=A23:ADENOSINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>A23</scene></td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3t4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t4b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3t4b RCSB], [http://www.ebi.ac.uk/pdbsum/3t4b PDBsum]</span></td></tr>
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<table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Translation of hepatitis C viral proteins requires an internal ribosome entry site (IRES) located in the 5' untranslated region of the viral mRNA. The core domain of the hepatitis C virus (HCV) IRES contains a four-way helical junction that is integrated within a predicted pseudoknot. This domain is required for positioning the mRNA start codon correctly on the 40S ribosomal subunit during translation initiation. Here, we present the crystal structure of this RNA, revealing a complex double-pseudoknot fold that establishes the alignment of two helical elements on either side of the four-helix junction. The conformation of this core domain constrains the open reading frame's orientation for positioning on the 40S ribosomal subunit. This structure, representing the last major domain of HCV-like IRESs to be determined at near-atomic resolution, provides the basis for a comprehensive cryoelectron microscopy-guided model of the intact HCV IRES and its interaction with 40S ribosomal subunits.
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Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioning.,Berry KE, Waghray S, Mortimer SA, Bai Y, Doudna JA Structure. 2011 Oct 12;19(10):1456-66. PMID:22000514<ref>PMID:22000514</ref>
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The line below this paragraph, containing "STRUCTURE_3t4b", creates the "Structure Box" on the page.
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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or leave the SCENE parameter empty for the default display.
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{{STRUCTURE_3t4b| PDB=3t4b | SCENE= }}
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===Crystal Structure of the HCV IRES pseudoknot domain===
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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</div>
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_22000514}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 22000514 is the PubMed ID number.
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</StructureSection>
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{{ABSTRACT_PUBMED_22000514}}
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==About this Structure==
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[[3t4b]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T4B OCA].
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==Reference==
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<ref group="xtra">PMID:022000514</ref><references group="xtra"/>
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[[Category: Bai, Y.]]
[[Category: Bai, Y.]]
[[Category: Berry, K E.]]
[[Category: Berry, K E.]]

Revision as of 05:43, 5 June 2014

Crystal Structure of the HCV IRES pseudoknot domain

3t4b, resolution 3.55Å

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