3t8n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:3t8n.png|left|200px]]
+
==Crystal structure of ketosteroid isomerase Y16AD103A from Pseudomonas putida==
 +
<StructureSection load='3t8n' size='340' side='right' caption='[[3t8n]], [[Resolution|resolution]] 1.47&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3t8n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3T8N FirstGlance]. <br>
 +
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDT:{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC+ACID'>EDT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
 +
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3rgr|3rgr]], [[3t8u|3t8u]], [[3m8c|3m8c]]</td></tr>
 +
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ksi ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=303 Pseudomonas putida])</td></tr>
 +
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Steroid_Delta-isomerase Steroid Delta-isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.3.1 5.3.3.1] </span></td></tr>
 +
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3t8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t8n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3t8n RCSB], [http://www.ebi.ac.uk/pdbsum/3t8n PDBsum]</span></td></tr>
 +
<table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Prior site-directed mutagenesis studies in bacterial ketosteroid isomerase (KSI) reported that substitution of both oxyanion hole hydrogen bond donors give a 10^5-10^8 fold rate reduction suggesting that the oxyanion hole may provide the major contribution to KSI catalysis. But these seemingly conservative mutations replaced the oxyanion hole hydrogen bond donors with hydrophobic side chains that could lead to suboptimal solvation of the incipient oxyanion in the mutants, thereby potentially exaggerating the apparent energetic benefit of the hydrogen bonds relative to water-mediated hydrogen bonds in solution. We determined the functional and structural consequences of substituting the oxyanion hole hydrogen bond donors and several residues surrounding the oxyanion hole with smaller residues in an attempt to create a local site that would provide interactions more analogous to those in aqueous solution. These more drastic mutations created an active site cavity estimated to be ~650 A^3 and sufficient for occupancy by 15-17 water molecules and led to a rate decrease of only ~10^3-fold for KSI from two different species, a much smaller effect than that observed from more traditional conservative mutations. The results underscore the strong context dependence of hydrogen bond energetics and suggest that the oxyanion hole provides an important, but moderate, catalytic contribution relative to the interactions in the corresponding solution reaction.
-
<!--
+
Evaluating the Catalytic Contribution from the Oxyanion Hole in Ketosteroid Isomerase.,Schwans JP, Sunden F, Gonzalez A, Tsai Y, Herschlag D J Am Chem Soc. 2011 Nov 4. PMID:22053826<ref>PMID:22053826</ref>
-
The line below this paragraph, containing "STRUCTURE_3t8n", creates the "Structure Box" on the page.
+
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
-
or leave the SCENE parameter empty for the default display.
+
-
-->
+
-
{{STRUCTURE_3t8n| PDB=3t8n | SCENE= }}
+
-
===Crystal structure of ketosteroid isomerase Y16AD103A from Pseudomonas putida===
+
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
 +
</div>
-
 
+
==See Also==
-
<!--
+
*[[Ketosteroid Isomerase|Ketosteroid Isomerase]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_22053826}}, adds the Publication Abstract to the page
+
== References ==
-
(as it appears on PubMed at http://www.pubmed.gov), where 22053826 is the PubMed ID number.
+
<references/>
-
-->
+
__TOC__
-
{{ABSTRACT_PUBMED_22053826}}
+
</StructureSection>
-
 
+
-
==About this Structure==
+
-
[[3t8n]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T8N OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:022053826</ref><references group="xtra"/>
+
[[Category: Pseudomonas putida]]
[[Category: Pseudomonas putida]]
[[Category: Steroid Delta-isomerase]]
[[Category: Steroid Delta-isomerase]]

Revision as of 05:48, 5 June 2014

Crystal structure of ketosteroid isomerase Y16AD103A from Pseudomonas putida

3t8n, resolution 1.47Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Views
Personal tools
Navigation
Toolbox