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3v2c

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[[Image:3v2c.png|left|200px]]
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==Crystal structure of YfiA bound to the 70S ribosome. This PDB entry contains coordinates for the 30S subunit with bound YfiA of the 1st ribosome in the ASU==
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<StructureSection load='3v2c' size='340' side='right' caption='[[3v2c]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3v2c]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V2C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V2C FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
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<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3v2d|3v2d]], [[3v2e|3v2e]], [[3v2f|3v2f]]</td></tr>
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<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b2597, JW2578, raiA, yfiA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v2c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v2c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v2c RCSB], [http://www.ebi.ac.uk/pdbsum/3v2c PDBsum]</span></td></tr>
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<table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Eubacteria inactivate their ribosomes as 100S dimers or 70S monomers upon entry into stationary phase. In Escherichia coli, 100S dimer formation is mediated by ribosome modulation factor (RMF) and hibernation promoting factor (HPF), or alternatively, the YfiA protein inactivates ribosomes as 70S monomers. Here, we present high-resolution crystal structures of the Thermus thermophilus 70S ribosome in complex with each of these stationary-phase factors. The binding site of RMF overlaps with that of the messenger RNA (mRNA) Shine-Dalgarno sequence, which prevents the interaction between the mRNA and the 16S ribosomal RNA. The nearly identical binding sites of HPF and YfiA overlap with those of the mRNA, transfer RNA, and initiation factors, which prevents translation initiation. The binding of RMF and HPF, but not YfiA, to the ribosome induces a conformational change of the 30S head domain that promotes 100S dimer formation.
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How hibernation factors RMF, HPF, and YfiA turn off protein synthesis.,Polikanov YS, Blaha GM, Steitz TA Science. 2012 May 18;336(6083):915-8. PMID:22605777<ref>PMID:22605777</ref>
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The line below this paragraph, containing "STRUCTURE_3v2c", creates the "Structure Box" on the page.
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{{STRUCTURE_3v2c| PDB=3v2c | SCENE= }}
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===Crystal structure of YfiA bound to the 70S ribosome. This PDB entry contains coordinates for the 30S subunit with bound YfiA of the 1st ribosome in the ASU===
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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</div>
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==See Also==
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*[[Ribosomal protein THX|Ribosomal protein THX]]
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The line below this paragraph, {{ABSTRACT_PUBMED_22605777}}, adds the Publication Abstract to the page
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*[[Ribosome 3D structures|Ribosome 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 22605777 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22605777}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Ecoli]]
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[[3v2c]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12] and [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V2C OCA].
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==Reference==
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<ref group="xtra">PMID:022605777</ref><references group="xtra"/>
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[[Category: Escherichia coli k-12]]
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[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
[[Category: Blaha, G M.]]
[[Category: Blaha, G M.]]

Revision as of 06:45, 5 June 2014

Crystal structure of YfiA bound to the 70S ribosome. This PDB entry contains coordinates for the 30S subunit with bound YfiA of the 1st ribosome in the ASU

3v2c, resolution 2.70Å

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