4ddi

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[[Image:4ddi.png|left|200px]]
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==Crystal structure of human OTUB1/UbcH5b~Ub/Ub==
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<StructureSection load='4ddi' size='340' side='right' caption='[[4ddi]], [[Resolution|resolution]] 3.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4ddi]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DDI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DDI FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ddg|4ddg]]</td></tr>
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<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">UBE2D2, UBC4, UBC5B, UBCH4, UBCH5B, HSPC263, OTB1, OTU1, OTUB1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]), UBC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ddi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ddi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ddi RCSB], [http://www.ebi.ac.uk/pdbsum/4ddi PDBsum]</span></td></tr>
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<table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Ubiquitylation entails the concerted action of E1, E2, and E3 enzymes. We recently reported that OTUB1, a deubiquitylase, inhibits the DNA damage response independently of its isopeptidase activity. OTUB1 does so by blocking ubiquitin transfer by UBC13, the cognate E2 enzyme for RNF168. OTUB1 also inhibits E2s of the UBE2D and UBE2E families. Here we elucidate the structural mechanism by which OTUB1 binds E2s to inhibit ubiquitin transfer. OTUB1 recognizes ubiquitin-charged E2s through contacts with both donor ubiquitin and the E2 enzyme. Surprisingly, free ubiquitin associates with the canonical distal ubiquitin-binding site on OTUB1 to promote formation of the inhibited E2 complex. Lys48 of donor ubiquitin lies near the OTUB1 catalytic site and the C terminus of free ubiquitin, a configuration that mimics the products of Lys48-linked ubiquitin chain cleavage. OTUB1 therefore co-opts Lys48-linked ubiquitin chain recognition to suppress ubiquitin conjugation and the DNA damage response.
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<!--
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OTUB1 Co-opts Lys48-Linked Ubiquitin Recognition to Suppress E2 Enzyme Function.,Juang YC, Landry MC, Sanches M, Vittal V, Leung CC, Ceccarelli DF, Mateo AR, Pruneda JN, Mao DY, Szilard RK, Orlicky S, Munro M, Brzovic PS, Klevit RE, Sicheri F, Durocher D Mol Cell. 2012 Feb 10;45(3):384-97. PMID:22325355<ref>PMID:22325355</ref>
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The line below this paragraph, containing "STRUCTURE_4ddi", creates the "Structure Box" on the page.
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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or leave the SCENE parameter empty for the default display.
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{{STRUCTURE_4ddi| PDB=4ddi | SCENE= }}
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===Crystal structure of human OTUB1/UbcH5b~Ub/Ub===
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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</div>
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==See Also==
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<!--
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*[[Thioesterase|Thioesterase]]
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The line below this paragraph, {{ABSTRACT_PUBMED_22325355}}, adds the Publication Abstract to the page
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*[[Ubiquitin conjugating enzyme|Ubiquitin conjugating enzyme]]
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(as it appears on PubMed at http://www.pubmed.gov), where 22325355 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_22325355}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[4ddi]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DDI OCA].
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==Reference==
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<ref group="xtra">PMID:022325355</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Juang, Y C.]]
[[Category: Juang, Y C.]]

Revision as of 07:23, 5 June 2014

Crystal structure of human OTUB1/UbcH5b~Ub/Ub

4ddi, resolution 3.80Å

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