1bce
From Proteopedia
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| - | [[Image:1bce.gif|left|200px]] | + | [[Image:1bce.gif|left|200px]] |
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| - | '''INTRAMOLECULAR TRIPLEX, NMR, 10 STRUCTURES''' | + | {{Structure |
| + | |PDB= 1bce |SIZE=350|CAPTION= <scene name='initialview01'>1bce</scene> | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
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| + | '''INTRAMOLECULAR TRIPLEX, NMR, 10 STRUCTURES''' | ||
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==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1BCE is a [ | + | 1BCE is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BCE OCA]. |
==Reference== | ==Reference== | ||
| - | Comparison of the solution structures of intramolecular DNA triple helices containing adjacent and non-adjacent CG.C+ triplets., Asensio JL, Brown T, Lane AN, Nucleic Acids Res. 1998 Aug 15;26(16):3677-86. PMID:[http:// | + | Comparison of the solution structures of intramolecular DNA triple helices containing adjacent and non-adjacent CG.C+ triplets., Asensio JL, Brown T, Lane AN, Nucleic Acids Res. 1998 Aug 15;26(16):3677-86. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9685482 9685482] |
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
[[Category: Asensio, J L.]] | [[Category: Asensio, J L.]] | ||
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[[Category: dna triplex]] | [[Category: dna triplex]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:09:06 2008'' |
Revision as of 08:09, 20 March 2008
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INTRAMOLECULAR TRIPLEX, NMR, 10 STRUCTURES
Overview
The solution conformations of the intramolecular triple helices d(AGAAGA-X-TCTTCT-X-TC+TTC+T) and d(AAGGAA-X-TTCCTT-X-TTC+C+TT) (X = non-nucleotide linker) have been determined by NMR.1H NMR spectra in H2O showed that the third strand cytosine residues are fully paired with the guanine residues, each using two Hoogsteen hydrogen bonds. Determination of the13C chemical shifts of the cytosine C6 and C5 and their one-bond coupling constants (1 J CH) conclusively showed that the Hoogsteen cytosine residues are protonated at N3. The global conformations of the two molecules determined with >19 restraints per residue are very similar (RMSD = 0.96 A). However, some differences in local conformation and dynamics were observed for the central two base triplets of the two molecules. The C N3H were less labile in adjacent CG.C+triplets than in non-adjacent ones, indicating that the adjacent charge does not kinetically destabilize these triplets. The sugar conformations of the two adjacent cytosine residues were different and the 5'-residue was atypical of protonated cytosine. Hence, there are subtle effects of the interaction between two adjacent cytosine residues. The central two purines in each sequence showed non-standard backbone conformations, averaging between gamma approximately 60 degrees and gamma approximately 180 degrees. This may be related to the difference in the dependence of the thermodynamic stability on pH observed for these two sequences.
About this Structure
1BCE is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Comparison of the solution structures of intramolecular DNA triple helices containing adjacent and non-adjacent CG.C+ triplets., Asensio JL, Brown T, Lane AN, Nucleic Acids Res. 1998 Aug 15;26(16):3677-86. PMID:9685482
Page seeded by OCA on Thu Mar 20 10:09:06 2008
