2dcx

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==NMR solution structure of the Dermaseptin antimicrobial peptide analog NC12-K4S4(1-13)a==
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[[Image:2dcx.png|left|200px]]
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<StructureSection load='2dcx' size='340' side='right' caption='[[2dcx]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2dcx]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DCX FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOA:12-AMINO-DODECANOIC+ACID'>DOA</scene><br>
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<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
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<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2dd6|2dd6]]</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dcx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dcx RCSB], [http://www.ebi.ac.uk/pdbsum/2dcx PDBsum]</span></td></tr>
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<table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Acyl conjugation to antimicrobial peptides is known to enhance antimicrobial properties. Here, we investigated the consequences of aminolauryl (NC(12)) conjugation to the dermaseptin derivative K(4)-S4-(1-13) (P) on binding properties to bilayer models mimicking bacterial plasma membrane, which is often cited as the ultimate site of action. Isothermal titration calorimetry revealed that acylation was responsible for enhancing the binding affinity of NC(12)-P compared with P (K = 13 x 10(5) and 1.5 x 10(5) m(-1), respectively). Surface plasmon resonance measurements confirmed the isothermal titration calorimetry results (K(app) = 12.6 x 10(5) and 1.53 x 10(5) m(-1), respectively) and further indicated that enhanced adhesion affinity (K(adhesion) = 3 x 10(5) and 1 x 10(5) m(-1), respectively) was coupled to enhanced tendency to insert within the bilayer (K(insertion) = 4.5 and 1.5, respectively). To gain insight into the molecular basis for these observations, we investigated the three-dimensional structures in the presence of dodecylphosphocholine using NMR. The ensemble of NMR-calculated structures (backbone root mean square deviation &lt;0.6 A) showed that the acyl moiety was responsible for a significant molecular reorganization, possibly affecting the electrostatic potential distribution in NC(12)-P relative to that of P. The combined data present compelling evidence in support of the hypothesis that N-acylation affects antimicrobial properties by modifying the secondary structure of the peptide in a manner that facilitates contact with the membrane and consequently increases its disruption.
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Consequences of N-acylation on structure and membrane binding properties of dermaseptin derivative K4-S4-(1-13).,Shalev DE, Rotem S, Fish A, Mor A J Biol Chem. 2006 Apr 7;281(14):9432-8. Epub 2005 Dec 30. PMID:16407175<ref>PMID:16407175</ref>
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The line below this paragraph, containing "STRUCTURE_2dcx", creates the "Structure Box" on the page.
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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or leave the SCENE parameter empty for the default display.
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{{STRUCTURE_2dcx| PDB=2dcx | SCENE= }}
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===NMR solution structure of the Dermaseptin antimicrobial peptide analog NC12-K4S4(1-13)a===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_16407175}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 16407175 is the PubMed ID number.
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</StructureSection>
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{{ABSTRACT_PUBMED_16407175}}
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==About this Structure==
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2DCX is a [[Single protein]] structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCX OCA].
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==Reference==
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Consequences of N-acylation on structure and membrane binding properties of dermaseptin derivative K4-S4-(1-13)., Shalev DE, Rotem S, Fish A, Mor A, J Biol Chem. 2006 Apr 7;281(14):9432-8. Epub 2005 Dec 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16407175 16407175]
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[[Category: Single protein]]
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[[Category: Fish, A.]]
[[Category: Fish, A.]]
[[Category: Mor, A.]]
[[Category: Mor, A.]]
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[[Category: Shalev, D E.]]
[[Category: Shalev, D E.]]
[[Category: Alpha-helix]]
[[Category: Alpha-helix]]
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[[Category: Peptide]]
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[[Category: Antimicrobial protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 12:24:27 2008''
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Revision as of 07:03, 9 June 2014

NMR solution structure of the Dermaseptin antimicrobial peptide analog NC12-K4S4(1-13)a

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