1bss
From Proteopedia
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| - | [[Image:1bss.gif|left|200px]] | + | [[Image:1bss.gif|left|200px]] |
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| - | '''ECORV-T93A/DNA/CA2+''' | + | {{Structure |
| + | |PDB= 1bss |SIZE=350|CAPTION= <scene name='initialview01'>1bss</scene>, resolution 2.15Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=CA:CALCIUM ION'>CA</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''ECORV-T93A/DNA/CA2+''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1BSS is a [ | + | 1BSS is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BSS OCA]. |
==Reference== | ==Reference== | ||
| - | Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases., Horton NC, Newberry KJ, Perona JJ, Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13489-94. PMID:[http:// | + | Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases., Horton NC, Newberry KJ, Perona JJ, Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13489-94. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9811827 9811827] |
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: complex (endonuclease ecorv/dna)]] | [[Category: complex (endonuclease ecorv/dna)]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:15:18 2008'' |
Revision as of 08:15, 20 March 2008
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| , resolution 2.15Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Activity: | Type II site-specific deoxyribonuclease, with EC number 3.1.21.4 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
ECORV-T93A/DNA/CA2+
Overview
The 2.15-A resolution cocrystal structure of EcoRV endonuclease mutant T93A complexed with DNA and Ca2+ ions reveals two divalent metals bound in one of the active sites. One of these metals is ligated through an inner-sphere water molecule to the phosphate group located 3' to the scissile phosphate. A second inner-sphere water on this metal is positioned approximately in-line for attack on the scissile phosphate. This structure corroborates the observation that the pro-SP phosphoryl oxygen on the adjacent 3' phosphate cannot be modified without severe loss of catalytic efficiency. The structural equivalence of key groups, conserved in the active sites of EcoRV, EcoRI, PvuII, and BamHI endonucleases, suggests that ligation of a catalytic divalent metal ion to this phosphate may occur in many type II restriction enzymes. Together with previous cocrystal structures, these data allow construction of a detailed model for the pretransition state configuration in EcoRV. This model features three divalent metal ions per active site and invokes assistance in the bond-making step by a conserved lysine, which stabilizes the attacking hydroxide ion nucleophile.
About this Structure
1BSS is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases., Horton NC, Newberry KJ, Perona JJ, Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13489-94. PMID:9811827
Page seeded by OCA on Thu Mar 20 10:15:18 2008
