4tnl
From Proteopedia
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| - | ''' | + | ==1.8 A resolution room temperature structure of Thermolysin recorded using an XFEL== |
| + | <StructureSection load='4tnl' size='340' side='right' caption='[[4tnl]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4tnl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_thermoproteolyticus Bacillus thermoproteolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TNL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TNL FirstGlance]. <br> | ||
| + | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br> | ||
| + | <tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thermolysin Thermolysin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.27 3.4.24.27] </span></td></tr> | ||
| + | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tnl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tnl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4tnl RCSB], [http://www.ebi.ac.uk/pdbsum/4tnl PDBsum]</span></td></tr> | ||
| + | <table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | phenix.refine is a program within the PHENIX package that supports crystallographic structure refinement against experimental data with a wide range of upper resolution limits using a large repertoire of model parameterizations. It has several automation features and is also highly flexible. Several hundred parameters enable extensive customizations for complex use cases. Multiple user-defined refinement strategies can be applied to specific parts of the model in a single refinement run. An intuitive graphical user interface is available to guide novice users and to assist advanced users in managing refinement projects. X-ray or neutron diffraction data can be used separately or jointly in refinement. phenix.refine is tightly integrated into the PHENIX suite, where it serves as a critical component in automated model building, final structure refinement, structure validation and deposition to the wwPDB. This paper presents an overview of the major phenix.refine features, with extensive literature references for readers interested in more detailed discussions of the methods. | ||
| - | + | Towards automated crystallographic structure refinement with phenix.refine.,Afonine PV, Grosse-Kunstleve RW, Echols N, Headd JJ, Moriarty NW, Mustyakimov M, Terwilliger TC, Urzhumtsev A, Zwart PH, Adams PD Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):352-67. doi:, 10.1107/S0907444912001308. Epub 2012 Mar 16. PMID:22505256<ref>PMID:22505256</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | + | == References == | |
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Bacillus thermoproteolyticus]] | ||
| + | [[Category: Thermolysin]] | ||
| + | [[Category: Adams, P D.]] | ||
| + | [[Category: Alonso-Mori, R.]] | ||
| + | [[Category: Bergmann, U.]] | ||
| + | [[Category: Bogan, M J.]] | ||
| + | [[Category: Boutet, S.]] | ||
| + | [[Category: Brewster, A.]] | ||
| + | [[Category: Chatterjee, R.]] | ||
| + | [[Category: DiFiore, D.]] | ||
| + | [[Category: Echols, N.]] | ||
| + | [[Category: Fry, A R.]] | ||
| + | [[Category: Gallo, E.]] | ||
| + | [[Category: Gildea, R J.]] | ||
| + | [[Category: Glatzel, P.]] | ||
| + | [[Category: Gloeckner, C.]] | ||
| + | [[Category: Gul, S.]] | ||
| + | [[Category: Han, G.]] | ||
| + | [[Category: Hattne, J.]] | ||
| + | [[Category: Hellmich, J.]] | ||
| + | [[Category: Ibrahim, M.]] | ||
| + | [[Category: Kern, J.]] | ||
| + | [[Category: Koglin, J E.]] | ||
| + | [[Category: Koroidov, S.]] | ||
| + | [[Category: Laksmono, H.]] | ||
| + | [[Category: Lampe, A.]] | ||
| + | [[Category: Lassalle-Kaiser, B.]] | ||
| + | [[Category: Messerschmidt, M.]] | ||
| + | [[Category: Messinger, J.]] | ||
| + | [[Category: Milathianaki, D.]] | ||
| + | [[Category: Sauter, N K.]] | ||
| + | [[Category: Seibert, M M.]] | ||
| + | [[Category: Sierra, R G.]] | ||
| + | [[Category: Skinner, D E.]] | ||
| + | [[Category: Sokaras, D.]] | ||
| + | [[Category: Stan, C A.]] | ||
| + | [[Category: Tran, R.]] | ||
| + | [[Category: Uhlig, J.]] | ||
| + | [[Category: Weng, T C.]] | ||
| + | [[Category: Williams, G J.]] | ||
| + | [[Category: Yachandra, V K.]] | ||
| + | [[Category: Yano, J.]] | ||
| + | [[Category: Zouni, A.]] | ||
| + | [[Category: Zwart, P H.]] | ||
| + | [[Category: Hydrolase]] | ||
| + | [[Category: X-ray free electron laser]] | ||
| + | [[Category: Zn protease]] | ||
Revision as of 07:21, 9 July 2014
1.8 A resolution room temperature structure of Thermolysin recorded using an XFEL
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Categories: Bacillus thermoproteolyticus | Thermolysin | Adams, P D. | Alonso-Mori, R. | Bergmann, U. | Bogan, M J. | Boutet, S. | Brewster, A. | Chatterjee, R. | DiFiore, D. | Echols, N. | Fry, A R. | Gallo, E. | Gildea, R J. | Glatzel, P. | Gloeckner, C. | Gul, S. | Han, G. | Hattne, J. | Hellmich, J. | Ibrahim, M. | Kern, J. | Koglin, J E. | Koroidov, S. | Laksmono, H. | Lampe, A. | Lassalle-Kaiser, B. | Messerschmidt, M. | Messinger, J. | Milathianaki, D. | Sauter, N K. | Seibert, M M. | Sierra, R G. | Skinner, D E. | Sokaras, D. | Stan, C A. | Tran, R. | Uhlig, J. | Weng, T C. | Williams, G J. | Yachandra, V K. | Yano, J. | Zouni, A. | Zwart, P H. | Hydrolase | X-ray free electron laser | Zn protease
