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1omi
From Proteopedia
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| - | + | ==Crystal structure of PrfA,the transcriptional regulator in Listeria monocytogenes== | |
| - | + | <StructureSection load='1omi' size='340' side='right' caption='[[1omi]], [[Resolution|resolution]] 2.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1omi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OMI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OMI FirstGlance]. <br> | |
| - | + | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br> | |
| - | + | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PRFA OR LMO0200 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1639 Listeria monocytogenes])</td></tr> | |
| - | + | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1omi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1omi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1omi RCSB], [http://www.ebi.ac.uk/pdbsum/1omi PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1omi TOPSAN]</span></td></tr> | |
| - | == | + | <table> |
| - | [[1omi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Listeria_monocytogenes Listeria monocytogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OMI OCA]. | + | == Evolutionary Conservation == |
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/om/1omi_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Listeria monocytogenes]] | [[Category: Listeria monocytogenes]] | ||
[[Category: Almo, S C.]] | [[Category: Almo, S C.]] | ||
Revision as of 16:18, 28 September 2014
Crystal structure of PrfA,the transcriptional regulator in Listeria monocytogenes
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Categories: Listeria monocytogenes | Almo, S C. | Burley, S K. | Chance, M R. | Cossart, P. | Dodatko, T. | Fedorov, A A. | NYSGXRC, New York SGX Research Center for Structural Genomics. | Rajashankar, K. | Thirumuruhan, R. | Cap fold | Listeria monocytogene | New york sgx research center for structural genomic | Nysgxrc | Protein structure initiative | Psi | Structural genomic | Transcription | Transcriptional regulator prfa

