1fxy
From Proteopedia
| Line 1: | Line 1: | ||
| - | [[Image:1fxy.gif|left|200px]] | + | [[Image:1fxy.gif|left|200px]] |
| - | + | ||
| - | '''COAGULATION FACTOR XA-TRYPSIN CHIMERA INHIBITED WITH D-PHE-PRO-ARG-CHLOROMETHYLKETONE''' | + | {{Structure |
| + | |PDB= 1fxy |SIZE=350|CAPTION= <scene name='initialview01'>1fxy</scene>, resolution 2.15Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=CH2:METHYLENE GROUP'>CH2</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''COAGULATION FACTOR XA-TRYPSIN CHIMERA INHIBITED WITH D-PHE-PRO-ARG-CHLOROMETHYLKETONE''' | ||
| + | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
| - | 1FXY is a [ | + | 1FXY is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FXY OCA]. |
==Reference== | ==Reference== | ||
| - | New enzyme lineages by subdomain shuffling., Hopfner KP, Kopetzki E, Kresse GB, Bode W, Huber R, Engh RA, Proc Natl Acad Sci U S A. 1998 Aug 18;95(17):9813-8. PMID:[http:// | + | New enzyme lineages by subdomain shuffling., Hopfner KP, Kopetzki E, Kresse GB, Bode W, Huber R, Engh RA, Proc Natl Acad Sci U S A. 1998 Aug 18;95(17):9813-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9707558 9707558] |
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
| Line 28: | Line 37: | ||
[[Category: trypsin]] | [[Category: trypsin]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 11:15:25 2008'' |
Revision as of 09:15, 20 March 2008
| |||||||
| , resolution 2.15Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
COAGULATION FACTOR XA-TRYPSIN CHIMERA INHIBITED WITH D-PHE-PRO-ARG-CHLOROMETHYLKETONE
Overview
Protein functions have evolved in part via domain recombination events. Such events, for example, recombine structurally independent functional domains and shuffle targeting, regulatory, and/or catalytic functions. Domain recombination, however, can generate new functions, as implied by the observation of catalytic sites at interfaces of distinct folding domains. If useful to an evolving organism, such initially rudimentary functions would likely acquire greater efficiency and diversity, whereas the initially distinct folding domains would likely develop into single functional domains. This represents the probable evolution of the S1 serine protease family, whose two homologous beta-barrel subdomains assemble to form the binding sites and the catalytic machinery. Among S1 family members, the contact interface and catalytic residues are highly conserved whereas surrounding surfaces are highly variable. This observation suggests a new strategy to engineer viable proteins with novel properties, by swapping folding subdomains chosen from among protein family members. Such hybrid proteins would retain properties conserved throughout the family, including folding stability as single domain proteins, while providing new surfaces amenable to directed evolution or engineering of specific new properties. We show here that recombining the N-terminal subdomain from coagulation factor X with the C-terminal subdomain from trypsin creates a potent enzyme (fXYa) with novel properties, in particular a broad substrate specificity. As shown by the 2.15-A crystal structure, plasticity at the hydrophobic subdomain interface maintains activity, while surface loops are displaced compared with the parent subdomains. fXYa thus represents a new serine proteinase lineage with hybrid fX, trypsin, and novel properties.
About this Structure
1FXY is a Protein complex structure of sequences from Homo sapiens. Full crystallographic information is available from OCA.
Reference
New enzyme lineages by subdomain shuffling., Hopfner KP, Kopetzki E, Kresse GB, Bode W, Huber R, Engh RA, Proc Natl Acad Sci U S A. 1998 Aug 18;95(17):9813-8. PMID:9707558
Page seeded by OCA on Thu Mar 20 11:15:25 2008
