2k56

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[[Image:2k56.png|left|200px]]
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==Bank Vole Prion Protein (121-231)==
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<StructureSection load='2k56' size='340' side='right' caption='[[2k56]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2k56]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Myodes_glareolus Myodes glareolus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K56 FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PrP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=447135 Myodes glareolus])</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k56 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k56 RCSB], [http://www.ebi.ac.uk/pdbsum/2k56 PDBsum]</span></td></tr>
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<table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k5/2k56_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The recent introduction of bank vole (Clethrionomys glareolus) as an additional laboratory animal for research on prion diseases revealed an important difference when compared to the mouse and the Syrian hamster, since bank voles show a high susceptibility to infection by brain homogenates from a wide range of diseased species such as sheep, goats, and humans. In this context, we determined the NMR structure of the C-terminal globular domain of the recombinant bank vole prion protein (bvPrP) [bvPrP(121-231)] at 20 degrees C. bvPrP(121-231) has the same overall architecture as other mammalian PrPs, with three alpha-helices and an antiparallel beta-sheet, but it differs from PrP of the mouse and most other mammalian species in that the loop connecting the second beta-strand and helix alpha2 is precisely defined at 20 degrees C. This is similar to the previously described structures of elk PrP and the designed mouse PrP (mPrP) variant mPrP[S170N,N174T](121-231), whereas Syrian hamster PrP displays a structure that is in-between these limiting cases. Studies with the newly designed variant mPrP[S170N](121-231), which contains the same loop sequence as bvPrP, now also showed that the single-amino-acid substitution S170N in mPrP is sufficient for obtaining a well-defined loop, thus providing the rationale for this local structural feature in bvPrP.
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{{STRUCTURE_2k56| PDB=2k56 | SCENE= }}
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NMR structure of the bank vole prion protein at 20 degrees C contains a structured loop of residues 165-171.,Christen B, Perez DR, Hornemann S, Wuthrich K J Mol Biol. 2008 Nov 7;383(2):306-12. Epub 2008 Aug 26. PMID:18773909<ref>PMID:18773909</ref>
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===Bank Vole Prion Protein (121-231)===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_18773909}}
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==About this Structure==
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[[2k56]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Myodes_glareolus Myodes glareolus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K56 OCA].
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==See Also==
==See Also==
*[[Prion|Prion]]
*[[Prion|Prion]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:018773909</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Myodes glareolus]]
[[Category: Myodes glareolus]]
[[Category: Christen, B.]]
[[Category: Christen, B.]]

Revision as of 03:13, 29 September 2014

Bank Vole Prion Protein (121-231)

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