2ksz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:2ksz.png|left|200px]]
+
==The solution structure of the Magnesium bound soybean calmodulin isoform 4 N-domain==
 +
<StructureSection load='2ksz' size='340' side='right' caption='[[2ksz]], [[NMR_Ensembles_of_Models | 5 NMR models]]' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2ksz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KSZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KSZ FirstGlance]. <br>
 +
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
 +
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2roa|2roa]], [[1f70|1f70]]</td></tr>
 +
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCaM-4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3847 Glycine max])</td></tr>
 +
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ksz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ksz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ksz RCSB], [http://www.ebi.ac.uk/pdbsum/2ksz PDBsum]</span></td></tr>
 +
<table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/2ksz_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Soybean calmodulin isoform 4 (sCaM4) is a plant calcium binding protein, regulating cellular responses to the second messenger Ca(2+). We have found that the metal ion free (apo-) form of sCaM4 possesses a half unfolded structure, with the N-terminal domain unfolded and the C-terminal domain folded. This result was unexpected as the apo-forms of both soybean calmodulin isoform 1 (sCaM1) and mammalian CaM (mCaM) are fully folded. Due to the fact that free Mg(2+) ions are always present at high concentrations in cells (0.5 approximately 2 mM), we suggest that Mg(2+) should be bound to sCaM4 in non-activated cells. CD studies revealed that in the presence of Mg(2+) the initially unfolded N-terminal domain of sCaM4 folds into an alpha-helix-rich structure, similar to the Ca(2+)-form. We have used the NMR backbone residual dipolar coupling (RDC) restraints (1)D(NH), (1)D(CalphaHalpha), and (1)D(C)'(Calpha) to determine the solution structure of the N-terminal domain of Mg(2+)-sCaM4 (Mg(2+)-sCaM4-NT). Compared with the known structure of Ca(2+)-sCaM4, the structure of the Mg(2+)-sCaM4-NT does not fully open the hydrophobic pocket, which was further confirmed by the use of the fluorescent probe ANS. Tryptophan fluorescence experiments were used to study the interactions between Mg(2+)-sCaM4 and CaM-binding peptides derived from smooth muscle myosin light chain kinase as well as plant glutamate decarboxylase. These results suggest that Mg(2+)-sCaM4 does not bind to Ca(2+)-CaM target peptides, and therefore is functionally similar to apo-mCaM. The Mg(2+)- and apo- structures of the sCaM4-NT provide unique insights into the structure and function of some plant calmodulins in resting cells.
-
{{STRUCTURE_2ksz| PDB=2ksz | SCENE= }}
+
The solution structure of the Mg(2+)- form of soybean calmodulin isoform 4 reveals unique features of plant calmodulins in resting cells.,Huang H, Ishida H, Vogel HJ Protein Sci. 2010 Jan 6. PMID:20054830<ref>PMID:20054830</ref>
-
===The solution structure of the Magnesium bound soybean calmodulin isoform 4 N-domain===
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
{{ABSTRACT_PUBMED_20054830}}
+
-
 
+
-
==About this Structure==
+
-
[[2ksz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KSZ OCA].
+
==See Also==
==See Also==
*[[Calmodulin|Calmodulin]]
*[[Calmodulin|Calmodulin]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:020054830</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
[[Category: Glycine max]]
[[Category: Glycine max]]
[[Category: Huang, H.]]
[[Category: Huang, H.]]

Revision as of 09:22, 29 September 2014

The solution structure of the Magnesium bound soybean calmodulin isoform 4 N-domain

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Views
Personal tools
Navigation
Toolbox