1sxy

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[[Image:1sxy.png|left|200px]]
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==1.07 A Crystal Structure of D30N Mutant of Nitrophorin 4 from Rhodnius Prolixus==
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<StructureSection load='1sxy' size='340' side='right' caption='[[1sxy]], [[Resolution|resolution]] 1.07&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1sxy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodnius_prolixus Rhodnius prolixus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SXY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SXY FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene><br>
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<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1d2u|1d2u]], [[1sxu|1sxu]], [[1sxw|1sxw]], [[1sxx|1sxx]], [[1sy0|1sy0]], [[1sy1|1sy1]], [[1sy2|1sy2]], [[1sy3|1sy3]]</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sxy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sxy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1sxy RCSB], [http://www.ebi.ac.uk/pdbsum/1sxy PDBsum]</span></td></tr>
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<table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sx/1sxy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Nitrophorins are ferric heme proteins that transport nitric oxide (NO) from blood-sucking insects to victims. NO binding is tighter at lower pH values, as found in the insect salivary gland, and weaker at the pH of the victim's tissue, facilitating NO release and subsequent vasodilation. Previous structural analyses of nitrophorin 4 (NP4) from Rhodnius prolixus revealed a substantial NO-induced conformational change involving the A-B and G-H loops, which rearrange to desolvate the distal pocket and pack nonpolar residues against the heme-ligated NO. Previous kinetic analyses revealed a slow, biphasic, and pH-dependent NO release, which was proposed to be associated with loop movements. In this study, we created NP4 mutants D30A and D30N (A-B loop), D129A/L130A (G-H loop), and T121V (distal pocket). Eight crystal structures were determined, including complexes with NO, NH(3), and imidazole, to resolutions as high as 1.0 A. The NO-induced conformational change is largely abolished in the loop mutants, but retained in T121V. Kinetic analyses using stopped-flow spectroscopy revealed the pH dependence for NO release is eliminated for D129A/L130A, considerably reduced for D30A and D30N, but retained for T121V. NO association rates were increased 2-5-fold for T121V, but were unchanged in the loop mutants. Taken together, our findings demonstrate that the pH dependency for NO release is linked to loop dynamics and that solvent reorganization is apparently rate-limiting for formation of the initial iron-nitrosyl bond. Interestingly, the multiphasic kinetic behavior of rNPs was not affected by mutations, and its cause remains unclear.
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{{STRUCTURE_1sxy| PDB=1sxy | SCENE= }}
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Role of binding site loops in controlling nitric oxide release: structure and kinetics of mutant forms of nitrophorin 4.,Maes EM, Weichsel A, Andersen JF, Shepley D, Montfort WR Biochemistry. 2004 Jun 1;43(21):6679-90. PMID:15157102<ref>PMID:15157102</ref>
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===1.07 A Crystal Structure of D30N Mutant of Nitrophorin 4 from Rhodnius Prolixus===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_15157102}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[1sxy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodnius_prolixus Rhodnius prolixus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SXY OCA].
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</StructureSection>
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==Reference==
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<ref group="xtra">PMID:015157102</ref><references group="xtra"/>
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[[Category: Rhodnius prolixus]]
[[Category: Rhodnius prolixus]]
[[Category: Andersen, J F.]]
[[Category: Andersen, J F.]]

Revision as of 16:06, 29 September 2014

1.07 A Crystal Structure of D30N Mutant of Nitrophorin 4 from Rhodnius Prolixus

1sxy, resolution 1.07Å

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