1h80
From Proteopedia
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| - | [[Image:1h80.gif|left|200px]] | + | [[Image:1h80.gif|left|200px]] |
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| - | '''1,3-ALPHA-1,4-BETA-D-GALACTOSE-4-SULFATE-3,6-ANHYDRO-D-GALACTOSE-2-SULFATE 4 GALACTOHYDROLASE''' | + | {{Structure |
| + | |PDB= 1h80 |SIZE=350|CAPTION= <scene name='initialview01'>1h80</scene>, resolution 1.60Å | ||
| + | |SITE= <scene name='pdbsite=AC1:Cl+Binding+Site+For+Chain+A'>AC1</scene> | ||
| + | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Iota-carrageenase Iota-carrageenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.157 3.2.1.157] | ||
| + | |GENE= CGIA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=116059 Alteromonas sp. ATCC 43554]) | ||
| + | }} | ||
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| + | '''1,3-ALPHA-1,4-BETA-D-GALACTOSE-4-SULFATE-3,6-ANHYDRO-D-GALACTOSE-2-SULFATE 4 GALACTOHYDROLASE''' | ||
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==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1H80 is a [ | + | 1H80 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Alteromonas_sp._atcc_43554 Alteromonas sp. atcc 43554]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1H80 OCA]. |
==Reference== | ==Reference== | ||
| - | The iota-carrageenase of Alteromonas fortis. A beta-helix fold-containing enzyme for the degradation of a highly polyanionic polysaccharide., Michel G, Chantalat L, Fanchon E, Henrissat B, Kloareg B, Dideberg O, J Biol Chem. 2001 Oct 26;276(43):40202-9. Epub 2001 Aug 7. PMID:[http:// | + | The iota-carrageenase of Alteromonas fortis. A beta-helix fold-containing enzyme for the degradation of a highly polyanionic polysaccharide., Michel G, Chantalat L, Fanchon E, Henrissat B, Kloareg B, Dideberg O, J Biol Chem. 2001 Oct 26;276(43):40202-9. Epub 2001 Aug 7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11493601 11493601] |
[[Category: Alteromonas sp. atcc 43554]] | [[Category: Alteromonas sp. atcc 43554]] | ||
[[Category: Iota-carrageenase]] | [[Category: Iota-carrageenase]] | ||
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[[Category: iota-carrageenan double helix degradation]] | [[Category: iota-carrageenan double helix degradation]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 11:33:30 2008'' |
Revision as of 09:33, 20 March 2008
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| , resolution 1.60Å | |||||||
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| Sites: | |||||||
| Ligands: | , , and | ||||||
| Gene: | CGIA (Alteromonas sp. ATCC 43554) | ||||||
| Activity: | Iota-carrageenase, with EC number 3.2.1.157 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
1,3-ALPHA-1,4-BETA-D-GALACTOSE-4-SULFATE-3,6-ANHYDRO-D-GALACTOSE-2-SULFATE 4 GALACTOHYDROLASE
Overview
Carrageenans are gel-forming hydrocolloids extracted from the cell walls of marine red algae. They consist of d-galactose residues bound by alternate alpha(1-->3) and beta(1-->4) linkages and substituted by one (kappa-carrageenan), two (iota-carrageenan), or three (lambda-carrageenan) sulfate-ester groups per disaccharide repeating unit. Both the kappa- and iota-carrageenan chains adopt ordered conformations leading to the formation of highly ordered aggregates of double-stranded helices. Several kappa-carrageenases and iota-carrageenases have been cloned from marine bacteria. Kappa-carrageenases belong to family 16 of the glycoside hydrolases, which essentially encompasses polysaccharidases specialized in the hydrolysis of the neutral polysaccharides such as agarose, laminarin, lichenan, and xyloglucan. In contrast, iota-carrageenases constitute a novel glycoside hydrolase structural family. We report here the crystal structure of Alteromonas fortis iota-carrageenase at 1.6 A resolution. The enzyme folds into a right-handed parallel beta-helix of 10 complete turns with two additional C-terminal domains. Glu(245), Asp(247), or Glu(310), in the cleft of the enzyme, are proposed as candidate catalytic residues. The protein contains one sodium and one chloride binding site and three calcium binding sites shown to be involved in stabilizing the enzyme structure.
About this Structure
1H80 is a Single protein structure of sequence from Alteromonas sp. atcc 43554. Full crystallographic information is available from OCA.
Reference
The iota-carrageenase of Alteromonas fortis. A beta-helix fold-containing enzyme for the degradation of a highly polyanionic polysaccharide., Michel G, Chantalat L, Fanchon E, Henrissat B, Kloareg B, Dideberg O, J Biol Chem. 2001 Oct 26;276(43):40202-9. Epub 2001 Aug 7. PMID:11493601
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