This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1xkq
From Proteopedia
m (Protected "1xkq" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | + | ==Crystal Structure of Short-Chain Dehydrogenase/Reductase of unknown Function from Caenorhabditis Elegans with Cofactor== | |
| - | + | <StructureSection load='1xkq' size='340' side='right' caption='[[1xkq]], [[Resolution|resolution]] 2.10Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1xkq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XKQ FirstGlance]. <br> | |
| - | + | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene><br> | |
| - | + | <tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1xhl|1xhl]], [[1spx|1spx]], [[1ooe|1ooe]]</td></tr> | |
| - | + | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">R05D8.7 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6239 Caenorhabditis elegans])</td></tr> | |
| - | + | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xkq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xkq RCSB], [http://www.ebi.ac.uk/pdbsum/1xkq PDBsum], [http://www.topsan.org/Proteins/SECSG/1xkq TOPSAN]</span></td></tr> | |
| - | == | + | <table> |
| - | [[1xkq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XKQ OCA]. | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | == | + | Check<jmol> |
| - | < | + | <jmolCheckbox> |
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xk/1xkq_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Caenorhabditis elegans]] | [[Category: Caenorhabditis elegans]] | ||
[[Category: Arabshahi, A.]] | [[Category: Arabshahi, A.]] | ||
Revision as of 20:25, 29 September 2014
Crystal Structure of Short-Chain Dehydrogenase/Reductase of unknown Function from Caenorhabditis Elegans with Cofactor
| |||||||||||
Categories: Caenorhabditis elegans | Arabshahi, A. | Bray, T. | Bunzel, B. | Cao, Z. | Carson, M. | Chen, Y J. | DeLucas, L. | Gray, R. | Huang, W Y. | Johnson, D. | Karpova, E. | Li, S. | Lin, G. | Lu, S. | Luan, C H. | Luo, D. | Luo, M. | McKinstry, A. | Nagy, L. | Qiu, S. | SECSG, Southeast Collaboratory for Structural Genomics. | Schormann, N. | Shang, Q. | Symersky, J. | Tsao, J. | Zhang, Y. | Zhou, J. | Parrallel beta-sheet of seven strands in the order 3214567 | Protein structure initiative | Psi | Secsg | Seventh alpha-helix on top of beta-sheet | Southeast collaboratory for structural genomic | Structural genomic | Three alpha-helices on either side of beta-sheet | Unknown function

