This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2kmm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2kmm" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:2kmm.png|left|200px]]
+
==Solution NMR structure of the TGS domain of PG1808 from Porphyromonas gingivalis. Northeast Structural Genomics Consortium Target PgR122A (418-481)==
-
 
+
<StructureSection load='2kmm' size='340' side='right' caption='[[2kmm]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
-
{{STRUCTURE_2kmm| PDB=2kmm | SCENE= }}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2kmm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KMM FirstGlance]. <br>
-
===Solution NMR structure of the TGS domain of PG1808 from Porphyromonas gingivalis. Northeast Structural Genomics Consortium Target PgR122A (418-481)===
+
</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PG1808, PG_1808, spoT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 Porphyromonas gingivalis])</td></tr>
-
 
+
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kmm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kmm RCSB], [http://www.ebi.ac.uk/pdbsum/2kmm PDBsum]</span></td></tr>
-
 
+
<table>
-
==About this Structure==
+
== Evolutionary Conservation ==
-
[[2kmm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KMM OCA].
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/2kmm_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Porphyromonas gingivalis]]
[[Category: Porphyromonas gingivalis]]
[[Category: Acton, T B.]]
[[Category: Acton, T B.]]

Revision as of 08:10, 30 September 2014

Solution NMR structure of the TGS domain of PG1808 from Porphyromonas gingivalis. Northeast Structural Genomics Consortium Target PgR122A (418-481)

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Views
Personal tools
Navigation
Toolbox