2g33

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{{STRUCTURE_2g33| PDB=2g33 | SCENE= }}
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==Human Hepatitis B Virus T=4 capsid, strain adyw==
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===Human Hepatitis B Virus T=4 capsid, strain adyw===
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<StructureSection load='2g33' size='340' side='right' caption='[[2g33]], [[Resolution|resolution]] 3.96&Aring;' scene=''>
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{{ABSTRACT_PUBMED_16943288}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2g33]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Hepatitis_b_virus_subtype_adyw Hepatitis b virus subtype adyw]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G33 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G33 FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2g34|2g34]]</td></tr>
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<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10419 Hepatitis B virus subtype adyw])</td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g33 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2g33 RCSB], [http://www.ebi.ac.uk/pdbsum/2g33 PDBsum]</span></td></tr>
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<table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g3/2g33_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Hepatitis B virus (HBV) is a leading cause of liver disease and hepatocellular carcinoma; over 400 million people are chronically infected with HBV. Specific anti-HBV treatments, like most antivirals, target enzymes that are similar to host proteins. Virus capsid protein has no human homolog, making its assembly a promising but undeveloped therapeutic target. HAP1 [methyl 4-(2-chloro-4-fluorophenyl)-6-methyl-2-(pyridin-2-yl)-1,4-dihydropyrimidin e-5-carboxylate], a heteroaryldihydropyrimidine, is a potent HBV capsid assembly activator and misdirector. Knowledge of the structural basis for this activity would directly benefit the development of capsid-targeting therapeutic strategies. This report details the crystal structures of icosahedral HBV capsids with and without HAP1. We show that HAP1 leads to global structural changes by movements of subunits as connected rigid bodies. The observed movements cause the fivefold vertices to protrude from the liganded capsid, the threefold vertices to open, and the quasi-sixfold vertices to flatten, explaining the effects of HAP1 on assembled capsids and on the assembly process. We have identified a likely HAP1-binding site that bridges elements of secondary structure within a capsid-bound monomer, offering explanation for assembly activation. This site also interferes with interactions between capsid proteins, leading to quaternary changes and presumably assembly misdirection. These results demonstrate the plasticity of HBV capsids and the molecular basis for a tenable antiviral strategy.
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==About this Structure==
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Global structural changes in hepatitis B virus capsids induced by the assembly effector HAP1.,Bourne CR, Finn MG, Zlotnick A J Virol. 2006 Nov;80(22):11055-61. Epub 2006 Aug 30. PMID:16943288<ref>PMID:16943288</ref>
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[[2g33]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Hepatitis_b_virus_subtype_adyw Hepatitis b virus subtype adyw]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G33 OCA].
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
==See Also==
==See Also==
*[[Jmol/Visualizing large molecules|Jmol/Visualizing large molecules]]
*[[Jmol/Visualizing large molecules|Jmol/Visualizing large molecules]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:016943288</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Hepatitis b virus subtype adyw]]
[[Category: Hepatitis b virus subtype adyw]]
[[Category: Bourne, C R.]]
[[Category: Bourne, C R.]]

Revision as of 09:13, 30 September 2014

Human Hepatitis B Virus T=4 capsid, strain adyw

2g33, resolution 3.96Å

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