This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2rdx
From Proteopedia
| Line 1: | Line 1: | ||
| - | + | ==Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM== | |
| - | + | <StructureSection load='2rdx' size='340' side='right' caption='[[2rdx]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[2rdx]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Roseovarius_nubinhibens Roseovarius nubinhibens]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2qye 2qye]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RDX FirstGlance]. <br> |
| - | [[2rdx]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Roseovarius_nubinhibens Roseovarius nubinhibens]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2qye 2qye]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDX OCA]. | + | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br> |
| + | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ISM_14070 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314263 Roseovarius nubinhibens])</td></tr> | ||
| + | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2rdx RCSB], [http://www.ebi.ac.uk/pdbsum/2rdx PDBsum]</span></td></tr> | ||
| + | <table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdx_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
*[[Mandelate racemase|Mandelate racemase]] | *[[Mandelate racemase|Mandelate racemase]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Roseovarius nubinhibens]] | [[Category: Roseovarius nubinhibens]] | ||
[[Category: Almo, S C.]] | [[Category: Almo, S C.]] | ||
Revision as of 20:05, 30 September 2014
Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM
| |||||||||||
Categories: Roseovarius nubinhibens | Almo, S C. | Bonanno, J. | Burley, S K. | Gerlt, J A. | Gheyi, T. | Gilmore, M. | Koss, J. | Lau, C. | Maletic, M. | NYSGXRC, New York SGX Research Center for Structural Genomics. | Ozyurt, S. | Patskovsky, Y. | Sauder, J M. | Wasserman, S R. | Enolase | New york sgx research center for structural genomic | New york structural genomics research consortium | Nysgrc | Nysgxrc | Protein structure initiative | Psi | Racemase | Structural genomic | Unknown function

