User:Angel Herraez/Sandbox 8

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<ref>DOI 10.1002/ijch.201300024</ref>
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<ref>DOI 10.1002/ijch.201300024</ref>
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default text DOI 10.1002/ijch.201300024
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<tbody>
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Info0.width = 340;Info0.height = 340;Info0.color = "white";Jmol.getApplet("jmolApplet1",Info0);Jmol.script(jmolApplet1,"set platformSpeed 5; DEFAULTPSPEED = 5; ");Jmol.script(jmolApplet1,"load models {0 0 1} /cgi-bin/getlateststructure?1stp.gz filter \"*.CA,*.P|HETATM,![HOH]\";script /wiki/extensions/Proteopedia/spt/initialview01.spt;");
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Jmol._Canvas2D (Jmol) "jmolApplet1" [x]
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i/extensions/jsmol/j2s/core/package.js
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i/extensions/jsmol/j2s/core/core.z.js
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-- required by ClazzNode
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Jmol JavaScript applet jmolApplet1__423981421885766__ initializing
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Jmol getValue debug null
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Jmol getValue logLevel null
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Jmol getValue allowjavascript null
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AppletRegistry.checkIn(jmolApplet1__423981421885766__)
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vwrOptions:
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{ "name":"jmolApplet1","applet":true,"documentBase":"http://proteopedia.org/wiki/index.php/User:Angel_Herraez/Sandbox_8","platform":"J.awtjs2d.Platform","fullName":"jmolApplet1__423981421885766__","codePath":"http:/wiki/extensions/jsmol/j2s/","display":"jmolApplet1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"423981421885766","bgcolor":"white" }
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setting document base to "http://proteopedia.org/wiki/index.php/User:Angel_Herraez/Sandbox_8"
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(C) 2012 Jmol Development
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Jmol Version: 14.3.5_2014.08.09 2014-08-09 14:25
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java.vendor: Java2Script (HTML5)
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java.version: JSmol 14.2.4_2014.08.05
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os.name: Mozilla/5.0 (Windows NT 6.3; WOW64; rv:32.0) Gecko/20100101 Firefox/32.0
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Access: ALL
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memory: 0.0/0.0
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processors available: 1
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useCommandThread: false
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appletId:jmolApplet1 (signed)
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Jmol getValue emulate null
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defaults = "Jmol"
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Jmol getValue boxbgcolor null
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Jmol getValue bgcolor white
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backgroundColor = "white"
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Jmol getValue ANIMFRAMECallback null
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Jmol getValue APPLETREADYCallback Jmol._readyCallback
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APPLETREADYCallback = "Jmol._readyCallback"
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Jmol getValue ATOMMOVEDCallback null
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Jmol getValue CLICKCallback null
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Jmol getValue DRAGDROPCallback null
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Jmol getValue ECHOCallback null
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Jmol getValue ERRORCallback null
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Jmol getValue EVALCallback null
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Jmol getValue HOVERCallback null
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Jmol getValue LOADSTRUCTCallback null
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Jmol getValue MEASURECallback null
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Jmol getValue MESSAGECallback null
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Jmol getValue MINIMIZATIONCallback null
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Jmol getValue PICKCallback null
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Jmol getValue RESIZECallback null
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Jmol getValue SCRIPTCallback null
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Jmol getValue SYNCCallback null
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Jmol getValue STRUCTUREMODIFIEDCallback null
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Loading language resource http:/wiki/extensions/jsmol/idioma/es.po
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FileManager opening 1 http://proteopedia.org/wiki/extensions/jsmol/idioma/es.po
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562 translations loaded
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Jmol getValue doTranslate null
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language=es
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Jmol getValue popupMenu null
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Jmol getValue script null
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Jmol getValue loadInline null
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Jmol getValue load null
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Jmol applet jmolApplet1__423981421885766__ ready
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i/extensions/jsmol/j2s/core/corescript.z.js
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script 1 started
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pdbGetHeader = true
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i/extensions/jsmol/j2s/core/coretext.z.js
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Loading, please wait ...
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platformSpeed = 5
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FileManager.getAtomSetCollectionFromFile(/cgi-bin/getlateststructure?1stp.gz)
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FileManager opening 1 http://proteopedia.org/cgi-bin/getlateststructure?1stp.gz
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i/extensions/jsmol/j2s/core/corezip.z.js
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The Resolver thinks Pdb
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i/extensions/jsmol/j2s/core/corebio.z.js
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i/extensions/jsmol/j2s/J/render/MeshRenderer.js
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-- required by J.renderbio.BioShapeRenderer
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i/extensions/jsmol/j2s/J/shape/Mesh.js
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filtering with ;*.CA;*.P|HETATM-Y;![HOH];
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 +
BIOTIN BINDING PROTEIN 12-MAR-92 1STP
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 +
STRUCTURAL ORIGINS OF HIGH-AFFINITY BIOTIN BINDING TO STREPTAVIDIN
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 +
found biomolecule 1: A
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biomolecule 1: number of transforms: 4
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Time for openFile(/cgi-bin/getlateststructure?1stp.gz): 595 ms
 +
 
 +
reading 137 atoms
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ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
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 +
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
 +
 
 +
Default Van der Waals type for model set to Jmol
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137 atoms created
 +
 
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ModelSet: autobonding; use autobond=false to not generate bonds automatically
 +
 
 +
BIOTIN BINDING PROTEIN 12-MAR-92 1STP
 +
 
 +
STRUCTURAL ORIGINS OF HIGH-AFFINITY BIOTIN BINDING TO STREPTAVIDIN
 +
 
 +
found biomolecule 1: A
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Adding embedded #jmolscript: select ({0:120});backbone only;select *;
 +
 
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i/extensions/jsmol/j2s/core/corescriptmath.z.js
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FileManager opening 1 http://proteopedia.org/wiki/extensions/Proteopedia/spt/initialview01.spt
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i/extensions/jsmol/j2s/JV/PropertyManager.js
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i/extensions/jsmol/j2s/core/coreprop.z.js
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-- required by JV.PropertyManager
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FileManager opening 1 http://proteopedia.org/wiki/extensions/Proteopedia/spt/initialview02.spt
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Displaying simplified model
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0 átomos ocultos
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i/extensions/jsmol/j2s/J/thread/SpinThread.js
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Script completed
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Jmol script terminated
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i/extensions/jsmol/j2s/J/g3d/HermiteRenderer.js
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spinFPS is set too fast (30) -- can't keep up!
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Jmol.jmolButton(jmolApplet1,"if(_spinning);spin off;spinflag = false;else;spin on;spinflag = true;endif","toggle spin");
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Jmol.jmolButton(jmolApplet1,"set refreshing off;if(antialiasDisplay);antialiasDisplay = false;antialiasDisplayFlag = false;else;antialiasDisplay = true;antialiasDisplayFlag = true;endif;set refreshing on;refresh;","toggle quality");
 +
 
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Caption for this structure
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</td>
</td>

Revision as of 11:01, 2 October 2014

Your Heading Here (maybe something like 'Structure')

<tbody> </tbody>

default text [1]


default text DOI 10.1002/ijch.201300024 Info0.width = 340;Info0.height = 340;Info0.color = "white";Jmol.getApplet("jmolApplet1",Info0);Jmol.script(jmolApplet1,"set platformSpeed 5; DEFAULTPSPEED = 5; ");Jmol.script(jmolApplet1,"load models {0 0 1} /cgi-bin/getlateststructure?1stp.gz filter \"*.CA,*.P|HETATM,![HOH]\";script /wiki/extensions/Proteopedia/spt/initialview01.spt;");



Jmol._Canvas2D (Jmol) "jmolApplet1" [x]

i/extensions/jsmol/j2s/core/package.js

i/extensions/jsmol/j2s/core/core.z.js

-- required by ClazzNode

Jmol JavaScript applet jmolApplet1__423981421885766__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet1__423981421885766__)

vwrOptions:

{ "name":"jmolApplet1","applet":true,"documentBase":"http://proteopedia.org/wiki/index.php/User:Angel_Herraez/Sandbox_8","platform":"J.awtjs2d.Platform","fullName":"jmolApplet1__423981421885766__","codePath":"http:/wiki/extensions/jsmol/j2s/","display":"jmolApplet1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"423981421885766","bgcolor":"white" }

setting document base to "http://proteopedia.org/wiki/index.php/User:Angel_Herraez/Sandbox_8"

(C) 2012 Jmol Development

Jmol Version: 14.3.5_2014.08.09 2014-08-09 14:25

java.vendor: Java2Script (HTML5)

java.version: JSmol 14.2.4_2014.08.05

os.name: Mozilla/5.0 (Windows NT 6.3; WOW64; rv:32.0) Gecko/20100101 Firefox/32.0

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet1 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Loading language resource http:/wiki/extensions/jsmol/idioma/es.po

FileManager opening 1 http://proteopedia.org/wiki/extensions/jsmol/idioma/es.po

562 translations loaded

Jmol getValue doTranslate null

language=es

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet1__423981421885766__ ready

i/extensions/jsmol/j2s/core/corescript.z.js

script 1 started

pdbGetHeader = true

i/extensions/jsmol/j2s/core/coretext.z.js

Loading, please wait ...

platformSpeed = 5


FileManager.getAtomSetCollectionFromFile(/cgi-bin/getlateststructure?1stp.gz)

FileManager opening 1 http://proteopedia.org/cgi-bin/getlateststructure?1stp.gz

i/extensions/jsmol/j2s/core/corezip.z.js

The Resolver thinks Pdb

i/extensions/jsmol/j2s/core/corebio.z.js

i/extensions/jsmol/j2s/J/render/MeshRenderer.js

-- required by J.renderbio.BioShapeRenderer

i/extensions/jsmol/j2s/J/shape/Mesh.js

filtering with ;*.CA;*.P|HETATM-Y;![HOH];

BIOTIN BINDING PROTEIN 12-MAR-92 1STP

STRUCTURAL ORIGINS OF HIGH-AFFINITY BIOTIN BINDING TO STREPTAVIDIN

found biomolecule 1: A

biomolecule 1: number of transforms: 4

Time for openFile(/cgi-bin/getlateststructure?1stp.gz): 595 ms

reading 137 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

137 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

BIOTIN BINDING PROTEIN 12-MAR-92 1STP

STRUCTURAL ORIGINS OF HIGH-AFFINITY BIOTIN BINDING TO STREPTAVIDIN

found biomolecule 1: A



Adding embedded #jmolscript: select ({0:120});backbone only;select *;

i/extensions/jsmol/j2s/core/corescriptmath.z.js

FileManager opening 1 http://proteopedia.org/wiki/extensions/Proteopedia/spt/initialview01.spt

i/extensions/jsmol/j2s/JV/PropertyManager.js

i/extensions/jsmol/j2s/core/coreprop.z.js

-- required by JV.PropertyManager

FileManager opening 1 http://proteopedia.org/wiki/extensions/Proteopedia/spt/initialview02.spt

Displaying simplified model

0 átomos ocultos

i/extensions/jsmol/j2s/J/thread/SpinThread.js

Script completed

Jmol script terminated

i/extensions/jsmol/j2s/J/g3d/HermiteRenderer.js

spinFPS is set too fast (30) -- can't keep up!





Jmol.jmolButton(jmolApplet1,"if(_spinning);spin off;spinflag = false;else;spin on;spinflag = true;endif","toggle spin");

Jmol.jmolButton(jmolApplet1,"set refreshing off;if(antialiasDisplay);antialiasDisplay = false;antialiasDisplayFlag = false;else;antialiasDisplay = true;antialiasDisplayFlag = true;endif;set refreshing on;refresh;","toggle quality");


Caption for this structure





References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024

Proteopedia Page Contributors and Editors (what is this?)

Angel Herraez

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