1rmv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1rmv" [edit=sysop:move=sysop])
Line 1: Line 1:
-
[[Image:1rmv.png|left|200px]]
+
==RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION==
 +
<StructureSection load='1rmv' size='340' side='right' caption='[[1rmv]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1rmv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ribgrass_mosaic_virus Ribgrass mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RMV FirstGlance]. <br>
 +
</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
 +
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rmv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rmv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rmv RCSB], [http://www.ebi.ac.uk/pdbsum/1rmv PDBsum]</span></td></tr>
 +
<table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rm/1rmv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The molecular dynamics (MD) method has been adapted for refinement of the structures of helical macromolecular aggregates aginst X-ray fiber diffraction data. To test the effectiveness of the method, refinements of the tobacco mosaic virus structure were carried out against a set of simulated fiber diffraction intensities using the MD method as well as the conventional restrained least-squares (RLS) method. The MD refinement converged to a very low R factor and produced a structure with generally satisfactory sterochemistry, while the RLS refinemnt was trapped at a local energy minimum with a larger R factor. Results suggest that the effective experimental radius of convergence of the MD method is significantly greater than that of the RLS method. Even when the initial structure is too far from the true structure to allow direct refinement, the MD method is able to find local minima that resemble the true structure sufficiently to allow improved phasing and thus lead to interpretable difference maps for model rebuilding.
-
{{STRUCTURE_1rmv| PDB=1rmv | SCENE= }}
+
Molecular dynamics in refinement against fiber diffraction data.,Wang H, Stubbs G Acta Crystallogr A. 1993 May 1;49(3):504-13. PMID:8129880<ref>PMID:8129880</ref>
-
===RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION===
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
{{ABSTRACT_PUBMED_8129880}}
+
-
 
+
-
==About this Structure==
+
-
[[1rmv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ribgrass_mosaic_virus Ribgrass mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RMV OCA].
+
==See Also==
==See Also==
*[[Virus coat protein|Virus coat protein]]
*[[Virus coat protein|Virus coat protein]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:008129880</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
[[Category: Ribgrass mosaic virus]]
[[Category: Ribgrass mosaic virus]]
[[Category: Stubbs, G.]]
[[Category: Stubbs, G.]]

Revision as of 08:52, 3 October 2014

RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION

1rmv, resolution 2.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1rmv"
Views
Personal tools
Navigation
Toolbox