1jdo

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[[Image:1jdo.gif|left|200px]]<br /><applet load="1jdo" size="350" color="white" frame="true" align="right" spinBox="true"
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[[Image:1jdo.gif|left|200px]]
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caption="1jdo, resolution 1.90&Aring;" />
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'''SPERM WHALE MYOGLOBIN (FERROUS, NITRIC OXIDE BOUND)'''<br />
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{{Structure
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|PDB= 1jdo |SIZE=350|CAPTION= <scene name='initialview01'>1jdo</scene>, resolution 1.90&Aring;
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|SITE=
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|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene> and <scene name='pdbligand=NO:NITROGEN OXIDE'>NO</scene>
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|ACTIVITY=
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|GENE=
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}}
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'''SPERM WHALE MYOGLOBIN (FERROUS, NITRIC OXIDE BOUND)'''
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==Overview==
==Overview==
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==About this Structure==
==About this Structure==
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1JDO is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon] with <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=HEM:'>HEM</scene> and <scene name='pdbligand=NO:'>NO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JDO OCA].
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1JDO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JDO OCA].
==Reference==
==Reference==
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Nitric oxide myoglobin: crystal structure and analysis of ligand geometry., Brucker EA, Olson JS, Ikeda-Saito M, Phillips GN Jr, Proteins. 1998 Mar 1;30(4):352-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9533619 9533619]
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Nitric oxide myoglobin: crystal structure and analysis of ligand geometry., Brucker EA, Olson JS, Ikeda-Saito M, Phillips GN Jr, Proteins. 1998 Mar 1;30(4):352-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9533619 9533619]
[[Category: Physeter catodon]]
[[Category: Physeter catodon]]
[[Category: Single protein]]
[[Category: Single protein]]
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[[Category: oxygen transport]]
[[Category: oxygen transport]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 13:21:29 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:02:01 2008''

Revision as of 10:02, 20 March 2008

Image:1jdo.gif


PDB ID 1jdo

Drag the structure with the mouse to rotate
, resolution 1.90Å
Ligands: , and
Coordinates: save as pdb, mmCIF, xml



SPERM WHALE MYOGLOBIN (FERROUS, NITRIC OXIDE BOUND)


Overview

The structure of the ferrous nitric oxide form of native sperm whale myoglobin has been determined by X-ray crystallography to 1.7 angstroms resolution. The nitric oxide ligand is bent with respect to the heme plane: the Fe-N-O angle is 112 degrees. This angle is smaller than those observed in model compounds and in lupin leghemoglobin. The exact angle appears to be influenced by the strength of the proximal bond and hydrogen bonding interactions between the distal histidine and the bound ligand. Specifically, the N(epsilon) atom of histidine64 is located 2.8 angstroms away from the nitrogen atom of the bound ligand, implying electrostatic stabilization of the FeNO complex. This interpretation is supported by mutagenesis studies. When histidine64 is replaced with apolar amino acids, the rate of nitric oxide dissociation from myoglobin increases tenfold.

About this Structure

1JDO is a Single protein structure of sequence from Physeter catodon. Full crystallographic information is available from OCA.

Reference

Nitric oxide myoglobin: crystal structure and analysis of ligand geometry., Brucker EA, Olson JS, Ikeda-Saito M, Phillips GN Jr, Proteins. 1998 Mar 1;30(4):352-6. PMID:9533619

Page seeded by OCA on Thu Mar 20 12:02:01 2008

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