1je8
From Proteopedia
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| - | [[Image:1je8.gif|left|200px]] | + | [[Image:1je8.gif|left|200px]] |
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| - | '''Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site''' | + | {{Structure |
| + | |PDB= 1je8 |SIZE=350|CAPTION= <scene name='initialview01'>1je8</scene>, resolution 2.12Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1JE8 is a [ | + | 1JE8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JE8 OCA]. |
==Reference== | ==Reference== | ||
| - | Dimerization allows DNA target site recognition by the NarL response regulator., Maris AE, Sawaya MR, Kaczor-Grzeskowiak M, Jarvis MR, Bearson SM, Kopka ML, Schroder I, Gunsalus RP, Dickerson RE, Nat Struct Biol. 2002 Oct;9(10):771-8. PMID:[http:// | + | Dimerization allows DNA target site recognition by the NarL response regulator., Maris AE, Sawaya MR, Kaczor-Grzeskowiak M, Jarvis MR, Bearson SM, Kopka ML, Schroder I, Gunsalus RP, Dickerson RE, Nat Struct Biol. 2002 Oct;9(10):771-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12352954 12352954] |
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: two-component response regulator]] | [[Category: two-component response regulator]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:02:12 2008'' |
Revision as of 10:02, 20 March 2008
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| , resolution 2.12Å | |||||||
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| Coordinates: | save as pdb, mmCIF, xml | ||||||
Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site
Overview
Two-component signal transduction systems are modular phosphorelay regulatory pathways common in prokaryotes. In the co-crystal structure of the Escherichia coli NarL signal output domain bound to DNA, we observe how the NarL family of two-component response regulators can bind DNA. DNA recognition is accompanied by the formation of a new dimerization interface, which could occur only in the full-length protein via a large intramolecular domain rearrangement. The DNA is recognized by the concerted effects of solvation, van der Waals forces and inherent DNA deformability, rather than determined primarily by major groove hydrogen bonding. These subtle forces permit a small DNA-binding domain to perturb the DNA helix, leading to major DNA curvature and a transition from B- to A-form DNA at the binding site, where valine on the recognition helix interacts unexpectedly with the polar major groove floor.
About this Structure
1JE8 is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Dimerization allows DNA target site recognition by the NarL response regulator., Maris AE, Sawaya MR, Kaczor-Grzeskowiak M, Jarvis MR, Bearson SM, Kopka ML, Schroder I, Gunsalus RP, Dickerson RE, Nat Struct Biol. 2002 Oct;9(10):771-8. PMID:12352954
Page seeded by OCA on Thu Mar 20 12:02:12 2008
